myRT

myRT report for GCA_009019635.1_ASM901963v1

Download annotations/find similar RTs

Seq: WCVP01000126.1 Bacteroides uniformis strain BIOML-A62 scaffold126_size13388, whole genome shotgun sequence (13388 bp)
Overview 1 RT 1: 3-3794 bp Neighborhood of RT #1 [3, 3814] RVT-GII YkfC HTH_ARAC Feature: gene Location: 3-1310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-633 bp Feature: domain Description: YkfC Location: 843-933 bp Feature: domain Description: YkfC Location: 843-933 bp Feature: gene Location: 1264-2514 bp Feature: gene Location: 2684-3814 bp Feature: domain Description: HTH_ARAC Location: 3548-3794 bp Feature: domain Description: HTH_ARAC Location: 3548-3794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YkfC (COG3344), HTH_ARAC (smart00342)

Seq: WCVP01000024.1 Bacteroides uniformis strain BIOML-A62 scaffold24_size41412, whole genome shotgun sequence (41412 bp)
Overview 1 RT 1: 37595-41411 bp Neighborhood of RT #1 [37595, 41411] TraG-D_C RVT-GII Intron_maturas2 HNHc Feature: gene Location: 37595-37738 bp Feature: gene Location: 37759-38928 bp Feature: domain Description: TraG-D_C Location: 38284-38617 bp Feature: domain Description: TraG-D_C Location: 382 84-38617 bp Feature: gene Location: 38915-40720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39179-40001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39179-40001 bp Feature: domain Description: Intron_maturas2 Location: 40079-40409 bp Feature: domain Description: Intron_maturas2 Location: 40079-40409 bp Feature: domain Description: HNHc Note: nucleases Location: 40553-40697 bp Feature: domain Description: HNHc Note: nucleases Location: 40553-40697 bp Feature: gene Location: 40722-41237 bp Feature: gene Location: 41265-41411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WCVP01000285.1 Bacteroides uniformis strain BIOML-A62 scaffold285_size2422, whole genome shotgun sequence (2422 bp)
Overview 1 RT 1: 122-2240 bp Neighborhood of RT #1 [122, 2240] RVT_N RVT-GII GIIM Feature: gene Location: 122-1774 bp Feature: domain Description: RVT_N Location: 176-419 bp Feature: domain Description: RVT_N Location: 176-419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: domain Description: GIIM Note: maturase Location: 1166-13 97 bp Feature: gene Location: 2091-2240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCVP01000292.1 Bacteroides uniformis strain BIOML-A62 scaffold292_size2352, whole genome shotgun sequence (2352 bp)
Overview 1 RT 1: 3-2253 bp Neighborhood of RT #1 [3, 2279] RVT-GII GDP_FS_SDR_e GDP_FS_SDR_e Feature: gene Location: 3-284 bp Feature: gene Location: 306-440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309-420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309-4 20 bp Feature: gene Location: 1031-1804 bp Feature: domain Description: GDP_FS_SDR_e Location: 1034-1778 bp Feature: domain Description: GDP_FS_SDR_e Location: 1034 -1778 bp Feature: gene Location: 1797-2279 bp Feature: domain Description: GDP_FS_SDR_e Location: 1851-2253 bp Feature: domain Description: GDP_FS_SDR_e Location: 1851-2253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GDP_FS_SDR_e (cd05239)

Seq: WCVP01000317.1 Bacteroides uniformis strain BIOML-A62 scaffold317_size1712, whole genome shotgun sequence (1712 bp)
Overview 1 RT 1: 280-1582 bp Neighborhood of RT #1 [280, 1582] RVT-DGRs Feature: gene Location: 280-906 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 493-886 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 493-886 bp Feature: gene Location: 1007-1582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCVP01000041.1 Bacteroides uniformis strain BIOML-A62 scaffold41_size30591, whole genome shotgun sequence (30591 bp)
Overview 1 RT 1: 5191-9090 bp Neighborhood of RT #1 [5191, 10082] HTH_18 MutS_I RVT-DGRs Avd_like BF2867_like_N Feature: gene Location: 5191-6048 bp Feature: domain Description: HTH_18 Location: 5800-6034 bp Feature: domain Description: HTH_18 Location: 5800-6 034 bp Feature: gene Location: 6072-6530 bp Feature: domain Description: MutS_I Location: 6117-6312 bp Feature: domain Description: MutS_I Location: 6 117-6 312 bp Feature: gene Location: 6527-7801 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6752-7442 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6 752-7442 bp Feature: gene Location: 8085-8459 bp Feature: domain Description: Avd_like Location: 8112-8418 bp Feature: domain Description: Avd_like Location: 8112-8418 bp Feature: gene Location: 8529-10082 bp Feature: domain Description: BF2867_like_N Location: 8565-9090 bp Feature: domain Description: BF286 7_like_N Location: 856 5-9090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_18 (pfam12833), MutS_I (pfam01624), RVT-DGRs, Avd_like (cd16376), BF2867_like_N (cd13120)

Seq: WCVP01000058.1 Bacteroides uniformis strain BIOML-A62 scaffold58_size27479, whole genome shotgun sequence (27479 bp)
Overview 1 RT 1: 6232-10455 bp Neighborhood of RT #1 [6232, 10455] TraG-D_C RVT-GII Intron_maturas2 Feature: gene Location: 6232-6645 bp Feature: gene Location: 6941-8122 bp Feature: domain Description: TraG-D_C Location: 7469-7802 bp Feature: domain Description: TraG-D_C Location: 7 469-7 802 bp Feature: gene Location: 8100-9962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8424-9246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8424-9246 bp Feature: domain Description: Intron_maturas2 Location: 9354-9624 bp Feature: domain Description: Intron_maturas2 Location: 9354-9624 bp Feature: gene Location: 10004-10249 bp Feature: gene Location: 10243-10455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCVP01000084.1 Bacteroides uniformis strain BIOML-A62 scaffold84_size21762, whole genome shotgun sequence (21762 bp)
Overview 1 RT 1: 11075-17407 bp Neighborhood of RT #1 [11075, 17407] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 11075-12142 bp Feature: domain Description: AAA_25 Location: 11210-11672 bp Feature: domain Description: AAA_25 Location: 11210-11672 bp Feature: gene Location: 12354-12536 bp Feature: gene Location: 13084-14892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13348-14170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13348 -14170 bp Feature: domain Description: Intron_maturas2 Location: 14239-14548 bp Feature: domain Description: Intron_maturas2 Location: 14239-14548 bp Feature: gene Location: 14846-15793 bp Feature: domain Description: Toprim_2 Location: 15416-15704 bp Feature: domain Description: Toprim_2 Location: 15416-15704 bp Feature: gene Location: 16004-17407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: WCVP01000099.1 Bacteroides uniformis strain BIOML-A62 scaffold99_size17525, whole genome shotgun sequence (17525 bp)
Overview 1 RT 1: 14228-17131 bp Neighborhood of RT #1 [14228, 17523] cNMP_binding RVT-GII GIIM Feature: gene Location: 14228-14794 bp Feature: domain Description: cNMP_binding Location: 14315-14576 bp Feature: domain Description: cNMP_binding Location: 14315-14576 bp Feature: gene Location: 14934-16262 bp Feature: gene Location: 16216-17523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16222-16846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16222-16846 bp Feature: domain Description: GIIM Note: maturase Location: 16900-17131 bp Feature: domain Description: GIIM Note: maturase Location: 169 00-17131 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT-GII, GIIM (pfam08388)