myRT

myRT report for GCA_009019775.1_ASM901977v1

Download annotations/find similar RTs

Seq: WCVI01000016.1 Bacteroides uniformis strain BIOML-A55 scaffold16_size90312, whole genome shotgun sequence (90312 bp)
Overview 1 RT 1: 22252-27262 bp Neighborhood of RT #1 [22252, 27528] YWFCY RVT-GII Intron_maturas2 HNHc TraG-D_C DUF4326 Feature: gene Location: 22252-23262 bp Feature: domain Description: YWFCY Location: 22258-22435 bp Feature: domain Description: YWFCY Location: 22258-22435 bp Feature: gene Location: 23290-23805 bp Feature: gene Location: 23807-25612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24071-24893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24071 -24893 bp Feature: domain Description: Intron_maturas2 Location: 24971-25301 bp Feature: domain Description: Intron_maturas2 Location: 24971 -25301 bp Feature: domain Description: HNHc Note: nucleases Location: 25445-25589 bp Feature: domain Description: HNHc Note: nucleases Location: 25445-25589 bp Feature: gene Location: 25599-26768 bp Feature: domain Description: TraG-D_C Location: 26124-26457 bp Feature: domain Description: TraG-D_C Location: 261 24-26457 bp Feature: gene Location: 26986-27528 bp Feature: domain Description: DUF4326 Location: 27007-27262 bp Feature: domain Description: DUF4326 Location: 27007-27262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraG-D_C (pfam12696), DUF4326 (pfam14216)

Seq: WCVI01000046.1 Bacteroides uniformis strain BIOML-A55 scaffold46_size36352, whole genome shotgun sequence (36352 bp)
Overview 1 RT 1: 1-1933 bp Neighborhood of RT #1 [1, 1933] RVT-DGRs Feature: gene Location: 1-1023 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4-529 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4-52 9 bp Feature: gene Location: 1056-1505 bp Feature: gene Location: 1691-1933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCVI01000053.1 Bacteroides uniformis strain BIOML-A55 scaffold53_size27364, whole genome shotgun sequence (27364 bp)
Overview 1 RT 1: 802-7018 bp 2 RT 2: 22831-26694 bp Neighborhood of RT #1 [802, 7018] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Neighborhood of RT #2 [22831, 27071] HTH_ARAC RVT_N RVT-GII YkfC Feature: gene Location: 802-2052 bp Feature: domain Description: Relaxase Location: 904-1354 bp Feature: domain Description: Relaxase Location: 904-13 54 bp Feature: gene Location: 2085-3011 bp Feature: domain Description: YWFCY Location: 2094-2271 bp Feature: domain Description: YWFCY Location: 2094-2271 bp Feature: gene Location: 3648-5300 bp Feature: domain Description: RVT_N Location: 3702-3945 bp Feature: domain Description: RVT_N Location: 3 702-3 945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3990-4638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 990-463 8 bp Feature: domain Description: GIIM Note: maturase Location: 4692-4923 bp Feature: domain Description: GIIM Note: maturase Location: 4692-4923 bp Feature: gene Location: 5305-6510 bp Feature: domain Description: TraG-D_C Location: 5887-6217 bp Feature: domain Description: TraG-D_C Location: 5887-6217 bp Feature: gene Location: 6605-7018 bp Feature: gene Location: 22831-23961 bp Feature: domain Description: HTH_ARAC Location: 23695-23941 bp Feature: domain Description: HTH_ARAC Location: 23 695-23 941 bp Feature: gene Location: 24131-25381 bp Feature: gene Location: 25335-27071 bp Feature: domain Description: RVT_N Location: 25458-25701 bp Feature: domain Description: RVT_N Location: 25458-25701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25746-26394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25746-263 94 bp Feature: domain Description: YkfC Location: 26604-26694 bp Feature: domain Description: YkfC Location: 26604-26694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), HTH_ARAC (smart00342), YkfC (COG3344)

Seq: WCVI01000054.1 Bacteroides uniformis strain BIOML-A55 scaffold54_size49699, whole genome shotgun sequence (49699 bp)
Overview 1 RT 1: 22006-31325 bp Neighborhood of RT #1 [22006, 31543] DUF1896 N6_Mtase COG4646 RVT_N RVT-GII GIIM cNMP_binding Feature: gene Location: 22006-22527 bp Feature: domain Description: DUF1896 Location: 22105-22525 bp Feature: domain Description: DUF1896 Location: 22105-22525 bp Feature: gene Location: 22517-27232 bp Feature: domain Description: N6_Mtase Location: 22829-23429 bp Feature: domain Description: N6_Mtase Location: 22829-234 29 bp Feature: domain Description: COG4646 Location: 24839-26849 bp Feature: domain Description: COG4 64 6 Location: 24 839-2684 9 bp Feature: gene Location: 27888-29555 bp Feature: domain Description: RVT_N Location: 27942-28185 bp Feature: domain Description: RVT_N Location: 2794 2-28185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28230-28878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28230-28878 bp Feature: domain Description: GIIM Note: maturase Location: 28932-29163 bp Feature: domain Description: GIIM Note: maturase Location: 28932-29163 bp Feature: gene Location: 29509-30837 bp Feature: gene Location: 30977-31543 bp Feature: domain Description: cNMP_binding Location: 31064-31325 bp Feature: domain Description: cNMP_binding Location: 31064 -31325 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), cNMP_binding (pfam00027)

Seq: WCVI01000092.1 Bacteroides uniformis strain BIOML-A55 scaffold92_size5410, whole genome shotgun sequence (5410 bp)
Overview 1 RT 1: 1567-4080 bp Neighborhood of RT #1 [1567, 4118] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 1567-2016 bp Feature: domain Description: GDP_FS_SDR_e Location: 1588-1990 bp Feature: domain Description: GDP_FS_SDR_e Location: 15 88-1990 bp Feature: gene Location: 2009-2782 bp Feature: domain Description: GDP_FS_SDR_e Location: 2012-2756 bp Feature: domain Description: GDP_FS_SDR_e Location: 2012-275 6 bp Feature: gene Location: 3373-3507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3376-3487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3376-3487 bp Feature: gene Location: 3529-3852 bp Feature: gene Location: 3897-4118 bp Feature: domain Description: Gmd Location: 3921-4080 bp Feature: domain Description: Gmd Location: 3921-4080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)