myRT

myRT report for GCA_009019785.1_ASM901978v1

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Seq: WCVH01000100.1 Bacteroides uniformis strain BIOML-A54 scaffold100_size6753, whole genome shotgun sequence (6753 bp)
Overview 1 RT 1: 2978-5491 bp Neighborhood of RT #1 [2978, 5529] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 2978-3427 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: gene Location: 3420-4193 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-41 67 bp Feature: gene Location: 4784-4918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: gene Location: 4940-5263 bp Feature: gene Location: 5308-5529 bp Feature: domain Description: Gmd Location: 5332-5491 bp Feature: domain Description: Gmd Location: 5332-5491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)

Seq: WCVH01000111.1 Bacteroides uniformis strain BIOML-A54 scaffold111_size3871, whole genome shotgun sequence (3871 bp)
Overview 1 RT 1: 3-3868 bp Neighborhood of RT #1 [3, 3870] YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 3-881 bp Feature: domain Description: YWFCY Location: 6-141 bp Feature: domain Description: YWFCY Location: 6-141 bp Feature: gene Location: 1518-3170 bp Feature: domain Description: RVT_N Location: 1572-1815 bp Feature: domain Description: RVT_N Location: 1572 -1815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1860-2508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1860-2 508 bp Feature: domain Description: GIIM Note: maturase Location: 2562-2793 bp Feature: domain Description: GIIM Note: maturase Location: 2 562 -2 793 bp Feature: gene Location: 3175-3870 bp Feature: domain Description: TraG-D_C Location: 3757-3868 bp Feature: domain Description: TraG-D_C Location: 3757-3868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: WCVH01000145.1 Bacteroides uniformis strain BIOML-A54 scaffold145_size1711, whole genome shotgun sequence (1711 bp)
Overview 1 RT 1: 131-938 bp Neighborhood of RT #1 [131, 1432] RVT-DGRs Feature: gene Location: 131-1432 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 344-938 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 44-93 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCVH01000001.1 Bacteroides uniformis strain BIOML-A54 scaffold1_size318074, whole genome shotgun sequence (318074 bp)
Overview 1 RT 1: 168213-174545 bp Neighborhood of RT #1 [168213, 174545] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 168213-169280 bp Feature: domain Description: AAA_25 Location: 168348-168810 bp Feature: domain Description: AAA_25 Location: 16834 8-168810 bp Feature: gene Location: 169441-169674 bp Feature: gene Location: 170222-172030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170486-171308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1704 86-171308 bp Feature: domain Description: Intron_maturas2 Location: 171377-171686 bp Feature: domain Description: Intron_maturas2 Location: 171377-171686 bp Feature: gene Location: 172002-172931 bp Feature: domain Description: Toprim_2 Location: 172554-172842 bp Feature: domain Description: Toprim_2 Location: 172554 -17284 2 bp Feature: gene Location: 173142-174545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: WCVH01000039.1 Bacteroides uniformis strain BIOML-A54 scaffold39_size47298, whole genome shotgun sequence (47298 bp)
Overview 1 RT 1: 42972-47164 bp Neighborhood of RT #1 [42972, 47164] RVT-GII Intron_maturas2 TraG-D_C Feature: gene Location: 42972-43142 bp Feature: gene Location: 43132-43392 bp Feature: gene Location: 43434-45296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43758-44580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4375 8-445 80 bp Feature: domain Description: Intron_maturas2 Location: 44688-44958 bp Feature: domain Description: Intron_maturas2 Location: 44688-4495 8 bp Feature: gene Location: 45274-46455 bp Feature: domain Description: TraG-D_C Location: 45802-46135 bp Feature: domain Description: TraG-D_C Location: 45 802-46135 bp Feature: gene Location: 46751-47164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), TraG-D_C (pfam12696)

Seq: WCVH01000043.1 Bacteroides uniformis strain BIOML-A54 scaffold43_size41103, whole genome shotgun sequence (41103 bp)
Overview 1 RT 1: 31344-35899 bp Neighborhood of RT #1 [31344, 35913] AbiEii AbiEi_3_N RVT-DGRs MutS_I HTH_18 Feature: gene Location: 31344-32357 bp Feature: domain Description: AbiEii Location: 31470-32304 bp Feature: domain Description: AbiEii Location: 31470-32304 bp Feature: gene Location: 32354-32950 bp Feature: domain Description: AbiEi_3_N Location: 32429-32672 bp Feature: domain Description: AbiEi_3_N Location: 32429-326 72 bp Feature: gene Location: 33303-34577 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33528-34218 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33528-34218 bp Feature: gene Location: 34574-35032 bp Feature: domain Description: MutS_I Location: 34619-34814 bp Feature: domain Description: MutS_I Location: 346 19-34814 bp Feature: gene Location: 35056-35913 bp Feature: domain Description: HTH_18 Location: 35665-35899 bp Feature: domain Description: HTH_18 Location: 356 6 5-35899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), RVT-DGRs, MutS_I (pfam01624), HTH_18 (pfam12833)

Seq: WCVH01000061.1 Bacteroides uniformis strain BIOML-A54 scaffold61_size20422, whole genome shotgun sequence (20422 bp)
Overview 1 RT 1: 16445-20396 bp Neighborhood of RT #1 [16445, 20396] cNMP_binding RVT_N RVT-GII GIIM Feature: gene Location: 16445-17011 bp Feature: domain Description: cNMP_binding Location: 16532-16793 bp Feature: domain Description: cNMP_binding Location: 16532-167 93 bp Feature: gene Location: 17151-18479 bp Feature: gene Location: 18433-20100 bp Feature: domain Description: RVT_N Location: 18487-18730 bp Feature: domain Description: RVT_N Location: 18487 -187 30 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18775-19423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187 7 5-19423 bp Feature: domain Description: GIIM Note: maturase Location: 19477-19708 bp Feature: domain Description: GIIM Note: maturase Location: 1947 7 -197 08 bp Feature: gene Location: 20115-20396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCVH01000079.1 Bacteroides uniformis strain BIOML-A54 scaffold79_size13395, whole genome shotgun sequence (13395 bp)
Overview 1 RT 1: 3-3794 bp Neighborhood of RT #1 [3, 3814] RVT-GII YkfC HTH_ARAC Feature: gene Location: 3-1310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-633 bp Feature: domain Description: YkfC Location: 843-933 bp Feature: domain Description: YkfC Location: 8 43-933 bp Feature: gene Location: 1264-2514 bp Feature: gene Location: 2684-3814 bp Feature: domain Description: HTH_ARAC Location: 3548-3794 bp Feature: domain Description: HTH_ARAC Location: 3548 -3794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YkfC (COG3344), HTH_ARAC (smart00342)