myRT

myRT report for GCA_009019825.1_ASM901982v1

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Seq: WCVF01000122.1 Bacteroides uniformis strain BIOML-A52 scaffold122_size2322, whole genome shotgun sequence (2322 bp)
Overview 1 RT 1: 2-1674 bp Neighborhood of RT #1 [2, 2051] RVT_N RVT-GII YkfC Feature: gene Location: 2-361 bp Feature: gene Location: 315-2051 bp Feature: domain Description: RVT_N Location: 438-681 bp Feature: domain Description: RVT_N Location: 438-681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 726-1374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 726-1 374 bp Feature: domain Description: YkfC Location: 1584-1674 bp Feature: domain Description: YkfC Location: 1 584-1 674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: WCVF01000131.1 Bacteroides uniformis strain BIOML-A52 scaffold131_size1777, whole genome shotgun sequence (1777 bp)
Overview 1 RT 1: 3-1004 bp Neighborhood of RT #1 [3, 1498] RVT-DGRs Feature: gene Location: 3-200 bp Feature: gene Location: 197-1498 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 410-1004 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 410-1004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCVF01000038.1 Bacteroides uniformis strain BIOML-A52 scaffold38_size52404, whole genome shotgun sequence (52404 bp)
Overview 1 RT 1: 42645-47200 bp Neighborhood of RT #1 [42645, 47214] AbiEii AbiEi_3_N RVT-DGRs MutS_I HTH_18 Feature: gene Location: 42645-43658 bp Feature: domain Description: AbiEii Location: 42771-43605 bp Feature: domain Description: AbiEii Location: 42771-43 605 bp Feature: gene Location: 43655-44251 bp Feature: domain Description: AbiEi_3_N Location: 43730-43973 bp Feature: domain Description: AbiEi_3 _N Location: 43 73 0-43 973 bp Feature: gene Location: 44604-45878 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44829-45519 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44829-45519 bp Feature: gene Location: 45875-46333 bp Feature: domain Description: MutS_I Location: 45920-46115 bp Feature: domain Description: MutS_I Location: 45920-46115 bp Feature: gene Location: 46357-47214 bp Feature: domain Description: HTH_18 Location: 46966-47200 bp Feature: domain Description: HTH_18 Location: 46966-47200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), RVT-DGRs, MutS_I (pfam01624), HTH_18 (pfam12833)

Seq: WCVF01000004.1 Bacteroides uniformis strain BIOML-A52 scaffold4_size188659, whole genome shotgun sequence (188659 bp)
Overview 1 RT 1: 143530-148634 bp Neighborhood of RT #1 [143530, 148634] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 143530-144933 bp Feature: gene Location: 145144-146073 bp Feature: domain Description: Toprim_2 Location: 145696-145984 bp Feature: domain Description: Toprim_2 Location: 14 5696-14 5984 bp Feature: gene Location: 146045-147853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146309-147131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 6309-14 7131 bp Feature: domain Description: Intron_maturas2 Location: 147200-147509 bp Feature: domain Description: Intron_maturas2 Location: 14 7200-14 7509 bp Feature: gene Location: 148142-148285 bp Feature: gene Location: 148401-148634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCVF01000054.1 Bacteroides uniformis strain BIOML-A52 scaffold54_size21421, whole genome shotgun sequence (21421 bp)
Overview 1 RT 1: 135-4358 bp Neighborhood of RT #1 [135, 4358] TraG-D_C RVT-GII Intron_maturas2 Feature: gene Location: 135-548 bp Feature: gene Location: 844-2025 bp Feature: domain Description: TraG-D_C Location: 1372-1705 bp Feature: domain Description: TraG-D_C Location: 1372-1705 bp Feature: gene Location: 2003-3865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2327-3149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2327-3149 bp Feature: domain Description: Intron_maturas2 Location: 3257-3527 bp Feature: domain Description: Intron_maturas2 Location: 325 7-35 27 bp Feature: gene Location: 3907-4152 bp Feature: gene Location: 4128-4358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCVF01000056.1 Bacteroides uniformis strain BIOML-A52 scaffold56_size20005, whole genome shotgun sequence (20005 bp)
Overview 1 RT 1: 16028-19979 bp Neighborhood of RT #1 [16028, 19979] cNMP_binding RVT_N RVT-GII GIIM Feature: gene Location: 16028-16594 bp Feature: domain Description: cNMP_binding Location: 16115-16376 bp Feature: domain Description: cNMP_binding Location: 16 115-16 376 bp Feature: gene Location: 16734-18062 bp Feature: gene Location: 18016-19683 bp Feature: domain Description: RVT_N Location: 18070-18313 bp Feature: domain Description: RVT_N Location: 18070-18313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18358-19006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18358-19006 bp Feature: domain Description: GIIM Note: maturase Location: 19060-19291 bp Feature: domain Description: GIIM Note: maturase Location: 1906 0-19291 bp Feature: gene Location: 19698-19979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCVF01000080.1 Bacteroides uniformis strain BIOML-A52 scaffold80_size11130, whole genome shotgun sequence (11130 bp)
Overview 1 RT 1: 3-4888 bp Neighborhood of RT #1 [3, 4888] YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 3-881 bp Feature: domain Description: YWFCY Location: 6-141 bp Feature: domain Description: YWFCY Location: 6-141 bp Feature: gene Location: 1518-3170 bp Feature: domain Description: RVT_N Location: 1572-1815 bp Feature: domain Description: RVT_N Location: 157 2-1815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1860-2508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1860-2508 bp Feature: domain Description: GIIM Note: maturase Location: 2562-2793 bp Feature: domain Description: GIIM Note: maturase Location: 2562-27 93 bp Feature: gene Location: 3175-4380 bp Feature: domain Description: TraG-D_C Location: 3757-4087 bp Feature: domain Description: TraG-D_C Location: 37 57 -4087 bp Feature: gene Location: 4475-4888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: WCVF01000093.1 Bacteroides uniformis strain BIOML-A52 scaffold93_size6753, whole genome shotgun sequence (6753 bp)
Overview 1 RT 1: 2978-5491 bp Neighborhood of RT #1 [2978, 5529] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 2978-3427 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: gene Location: 3420-4193 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: gene Location: 4784-4918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478 7-48 98 bp Feature: gene Location: 4940-5263 bp Feature: gene Location: 5308-5529 bp Feature: domain Description: Gmd Location: 5332-5491 bp Feature: domain Description: Gmd Location: 5332-5491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)