myRT

myRT report for GCA_009019835.1_ASM901983v1

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Seq: WCVE01000025.1 Bacteroides uniformis strain BIOML-A51 scaffold25_size121066, whole genome shotgun sequence (121066 bp)
Overview 1 RT 1: 50056-52876 bp Neighborhood of RT #1 [50056, 52876] RVT-DGRs Feature: gene Location: 50056-50289 bp Feature: gene Location: 50311-50568 bp Feature: gene Location: 50665-51966 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50878-51472 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50878-51 472 bp Feature: gene Location: 51999-52448 bp Feature: gene Location: 52634-52876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCVE01000002.1 Bacteroides uniformis strain BIOML-A51 scaffold2_size318118, whole genome shotgun sequence (318118 bp)
Overview 1 RT 1: 168235-174567 bp Neighborhood of RT #1 [168235, 174567] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 168235-169302 bp Feature: domain Description: AAA_25 Location: 168370-168832 bp Feature: domain Description: AAA_2 5 Location: 168370-168832 bp Feature: gene Location: 169463-169696 bp Feature: gene Location: 170244-172052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170508-171330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170508-171330 bp Feature: domain Description: Intron_maturas2 Location: 171399-171708 bp Feature: domain Description: Intron_maturas2 Location: 171399-171708 bp Feature: gene Location: 172024-172953 bp Feature: domain Description: Toprim_2 Location: 172576-172864 bp Feature: domain Description: Toprim_2 Location: 172 576-172 864 bp Feature: gene Location: 173164-174567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: WCVE01000037.1 Bacteroides uniformis strain BIOML-A51 scaffold37_size52450, whole genome shotgun sequence (52450 bp)
Overview 1 RT 1: 5213-9729 bp Neighborhood of RT #1 [5213, 9782] HTH_18 MutS_I RVT-DGRs AbiEi_3_N AbiEii Feature: gene Location: 5213-6070 bp Feature: domain Description: HTH_18 Location: 5822-6056 bp Feature: domain Description: HTH_18 Location: 5822-6056 bp Feature: gene Location: 6094-6552 bp Feature: domain Description: MutS_I Location: 6139-6334 bp Feature: domain Description: MutS_I Location: 613 9-63 3 4 bp Feature: gene Location: 6549-7823 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6774-7464 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6774-7464 bp Feature: gene Location: 8176-8772 bp Feature: domain Description: AbiEi_3_N Location: 8251-8494 bp Feature: domain Description: AbiEi_3 _N Location: 8251-8494 bp Feature: gene Location: 8769-9782 bp Feature: domain Description: AbiEii Location: 8895-9729 bp Feature: domain Description: AbiEii Location: 8895-9729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_18 (pfam12833), MutS_I (pfam01624), RVT-DGRs, AbiEi_3_N (pfam17194), AbiEii (pfam08843)

Seq: WCVE01000048.1 Bacteroides uniformis strain BIOML-A51 scaffold48_size28522, whole genome shotgun sequence (28522 bp)
Overview 1 RT 1: 1960-8176 bp 2 RT 2: 23989-27852 bp Neighborhood of RT #1 [1960, 8176] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Neighborhood of RT #2 [23989, 28229] HTH_ARAC RVT_N RVT-GII YkfC Feature: gene Location: 1960-3210 bp Feature: domain Description: Relaxase Location: 2062-2512 bp Feature: domain Description: Relaxase Location: 2062-2512 bp Feature: gene Location: 3243-4169 bp Feature: domain Description: YWFCY Location: 3252-3429 bp Feature: domain Description: YWFCY Location: 3252-34 29 bp Feature: gene Location: 4806-6458 bp Feature: domain Description: RVT_N Location: 4860-5103 bp Feature: domain Description: RVT_N Location: 4 860-5103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5148-5796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 514 8-5796 bp Feature: domain Description: GIIM Note: maturase Location: 5850-6081 bp Feature: domain Description: GIIM Note: maturase Location: 5850-6081 bp Feature: gene Location: 6463-7668 bp Feature: domain Description: TraG-D_C Location: 7045-7375 bp Feature: domain Description: TraG-D_C Location: 704 5-7375 bp Feature: gene Location: 7763-8176 bp Feature: gene Location: 23989-25119 bp Feature: domain Description: HTH_ARAC Location: 24853-25099 bp Feature: domain Description: HTH_ARAC Location: 24 853-25099 bp Feature: gene Location: 25289-26539 bp Feature: gene Location: 26493-28229 bp Feature: domain Description: RVT_N Location: 26616-26859 bp Feature: domain Description: RVT_N Location: 26616-26859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26904-27552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26904 -27552 bp Feature: domain Description: YkfC Location: 27762-27852 bp Feature: domain Description: YkfC Location: 27762-27852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), HTH_ARAC (smart00342), YkfC (COG3344)

Seq: WCVE01000052.1 Bacteroides uniformis strain BIOML-A51 scaffold52_size22156, whole genome shotgun sequence (22156 bp)
Overview 1 RT 1: 18157-22108 bp Neighborhood of RT #1 [18157, 22108] cNMP_binding RVT_N RVT-GII GIIM Feature: gene Location: 18157-18723 bp Feature: domain Description: cNMP_binding Location: 18244-18505 bp Feature: domain Description: cNMP_binding Location: 18244-185 05 bp Feature: gene Location: 18863-20191 bp Feature: gene Location: 20145-21812 bp Feature: domain Description: RVT_N Location: 20199-20442 bp Feature: domain Description: RVT_N Location: 20199-20442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20487-21135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20487-21135 bp Feature: domain Description: GIIM Note: maturase Location: 21189-21420 bp Feature: domain Description: GIIM Note: maturase Location: 21189-21420 bp Feature: gene Location: 21827-22108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCVE01000053.1 Bacteroides uniformis strain BIOML-A51 scaffold53_size21505, whole genome shotgun sequence (21505 bp)
Overview 1 RT 1: 157-4380 bp Neighborhood of RT #1 [157, 4380] TraG-D_C RVT-GII Intron_maturas2 Feature: gene Location: 157-570 bp Feature: gene Location: 866-2047 bp Feature: domain Description: TraG-D_C Location: 1394-1727 bp Feature: domain Description: TraG-D_C Location: 1394-1727 bp Feature: gene Location: 2025-3887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2349-3171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2349-3171 bp Feature: domain Description: Intron_maturas2 Location: 3279-3549 bp Feature: domain Description: Intron_maturas2 Location: 3279-3549 bp Feature: gene Location: 3929-4174 bp Feature: gene Location: 4150-4380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCVE01000067.1 Bacteroides uniformis strain BIOML-A51 scaffold67_size14122, whole genome shotgun sequence (14122 bp)
Overview 1 RT 1: 3000-5513 bp Neighborhood of RT #1 [3000, 5551] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 3000-3449 bp Feature: domain Description: GDP_FS_SDR_e Location: 3021-3423 bp Feature: domain Description: GDP_FS_SDR_e Location: 3021-3423 bp Feature: gene Location: 3442-4215 bp Feature: domain Description: GDP_FS_SDR_e Location: 3445-4189 bp Feature: domain Description: GDP_FS_SDR_e Location: 3445-4189 bp Feature: gene Location: 4806-4940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4809-4920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4809-4920 bp Feature: gene Location: 4962-5285 bp Feature: gene Location: 5330-5551 bp Feature: domain Description: Gmd Location: 5354-5513 bp Feature: domain Description: Gmd Location: 5354-5513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)