myRT

myRT report for GCA_009019875.1_ASM901987v1

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Seq: WCVC01000104.1 Bacteroides uniformis strain BIOML-A49 scaffold104_size4238, whole genome shotgun sequence (4238 bp)
Overview 1 RT 1: 272-4188 bp Neighborhood of RT #1 [272, 4188] RVT_N RVT-GII YkfC Feature: gene Location: 272-2008 bp Feature: domain Description: RVT_N Location: 395-638 bp Feature: domain Description: RVT_N Location: 395-638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1 331 bp Feature: domain Description: YkfC Location: 1541-1631 bp Feature: domain Description: YkfC Location: 1 541 -1 631 bp Feature: gene Location: 1959-3212 bp Feature: gene Location: 3382-4188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: WCVC01000130.1 Bacteroides uniformis strain BIOML-A49 scaffold130_size2304, whole genome shotgun sequence (2304 bp)
Overview 1 RT 1: 323-2303 bp Neighborhood of RT #1 [323, 2303] RVT_N RVT-GII GIIM Feature: gene Location: 323-1990 bp Feature: domain Description: RVT_N Location: 377-620 bp Feature: domain Description: RVT_N Location: 377-62 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665-1313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665-1313 bp Feature: domain Description: GIIM Note: maturase Location: 1367-1598 bp Feature: domain Description: GIIM Note: maturase Location: 1367-1598 bp Feature: gene Location: 1944-2303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCVC01000155.1 Bacteroides uniformis strain BIOML-A49 scaffold155_size1333, whole genome shotgun sequence (1333 bp)
Overview 1 RT 1: 118-925 bp Neighborhood of RT #1 [118, 1332] RVT-DGRs Feature: gene Location: 118-1332 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 331-925 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 3 1-925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCVC01000033.1 Bacteroides uniformis strain BIOML-A49 scaffold33_size56352, whole genome shotgun sequence (56352 bp)
Overview 1 RT 1: 33192-37045 bp Neighborhood of RT #1 [33192, 37872] TraG-D_C RVT-GII Intron_maturas2 HNHc YWFCY Feature: gene Location: 33192-33335 bp Feature: gene Location: 33356-34525 bp Feature: domain Description: TraG-D_C Location: 33881-34214 bp Feature: domain Description: TraG-D_C Location: 33881-34 214 bp Feature: gene Location: 34512-36317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34776-35598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 776-35598 bp Feature: domain Description: Intron_maturas2 Location: 35676-36006 bp Feature: domain Description: Intron_maturas2 Location: 35676-36006 bp Feature: domain Description: HNHc Note: nucleases Location: 36150-36294 bp Feature: domain Description: HNHc Note: nucleases Location: 36150-36294 bp Feature: gene Location: 36319-36834 bp Feature: gene Location: 36862-37872 bp Feature: domain Description: YWFCY Location: 36868-37045 bp Feature: domain Description: YWFCY Location: 36868-3704 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293)

Seq: WCVC01000049.1 Bacteroides uniformis strain BIOML-A49 scaffold49_size32954, whole genome shotgun sequence (32954 bp)
Overview 1 RT 1: 22872-27750 bp Neighborhood of RT #1 [22872, 27764] BF2867_like_N Avd_like RVT-DGRs MutS_I HTH_18 Feature: gene Location: 22872-24425 bp Feature: domain Description: BF2867_like_N Location: 22908-23433 bp Feature: domain Description: BF2867_like_N Location: 22908-23433 bp Feature: gene Location: 24495-24869 bp Feature: domain Description: Avd_like Location: 24522-24828 bp Feature: domain Description: Avd_like Location: 245 22-24828 bp Feature: gene Location: 25139-26428 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25379-26069 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25 379-26069 bp Feature: gene Location: 26425-26883 bp Feature: domain Description: MutS_I Location: 26470-26665 bp Feature: domain Description: MutS_I Location: 26470-26665 bp Feature: gene Location: 26907-27764 bp Feature: domain Description: HTH_18 Location: 27516-27750 bp Feature: domain Description: HTH_18 Location: 275 16-2775 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BF2867_like_N (cd13120), Avd_like (cd16376), RVT-DGRs, MutS_I (pfam01624), HTH_18 (pfam12833)

Seq: WCVC01000079.1 Bacteroides uniformis strain BIOML-A49 scaffold79_size10762, whole genome shotgun sequence (10762 bp)
Overview 1 RT 1: 3-4522 bp Neighborhood of RT #1 [3, 4522] RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 3-515 bp Feature: gene Location: 1152-2804 bp Feature: domain Description: RVT_N Location: 1206-1449 bp Feature: domain Description: RVT_N Location: 1206 -1449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1494-2142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1494-2142 bp Feature: domain Description: GIIM Note: maturase Location: 2196-2427 bp Feature: domain Description: GIIM Note: maturase Location: 2196 -2427 bp Feature: gene Location: 2809-4014 bp Feature: domain Description: TraG-D_C Location: 3391-3721 bp Feature: domain Description: TraG-D_C Location: 3391-3721 bp Feature: gene Location: 4109-4522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: WCVC01000086.1 Bacteroides uniformis strain BIOML-A49 scaffold86_size7704, whole genome shotgun sequence (7704 bp)
Overview 1 RT 1: 135-4358 bp Neighborhood of RT #1 [135, 4358] TraG-D_C RVT-GII Intron_maturas2 Feature: gene Location: 135-548 bp Feature: gene Location: 844-2025 bp Feature: domain Description: TraG-D_C Location: 1372-1705 bp Feature: domain Description: TraG-D_C Location: 137 2-17 05 bp Feature: gene Location: 2003-3805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2267-3089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2267 -3089 bp Feature: domain Description: Intron_maturas2 Location: 3197-3467 bp Feature: domain Description: Intron_maturas2 Location: 3197 -3467 bp Feature: gene Location: 3907-4167 bp Feature: gene Location: 4128-4358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCVC01000093.1 Bacteroides uniformis strain BIOML-A49 scaffold93_size6576, whole genome shotgun sequence (6576 bp)
Overview 1 RT 1: 2978-5491 bp Neighborhood of RT #1 [2978, 5529] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 2978-3427 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: gene Location: 3420-4193 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: gene Location: 4784-4918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478 7-48 98 bp Feature: gene Location: 4940-5263 bp Feature: gene Location: 5308-5529 bp Feature: domain Description: Gmd Location: 5332-5491 bp Feature: domain Description: Gmd Location: 5332-5491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)