myRT

myRT report for GCA_009019885.1_ASM901988v1

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Seq: WCVG01000010.1 Bacteroides uniformis strain BIOML-A53 scaffold10_size126214, whole genome shotgun sequence (126214 bp)
Overview 1 RT 1: 65852-75329 bp Neighborhood of RT #1 [65852, 75329] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 65852-72598 bp Feature: domain Description: Laminin_G_3 Location: 67316-67409 bp Feature: domain Description: Laminin_G_3 Location: 6731 6-67409 bp Feature: domain Description: Laminin_G_3 Location: 68054-68477 bp Feature: domain Description: Laminin_G_3 Location: 68054-68477 bp Feature: gene Location: 72849-73049 bp Feature: gene Location: 73121-74425 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 73334-73928 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 73334-73928 bp Feature: gene Location: 74422-74907 bp Feature: gene Location: 75087-75329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WCVG01000122.1 Bacteroides uniformis strain BIOML-A53 scaffold122_size2322, whole genome shotgun sequence (2322 bp)
Overview 1 RT 1: 2-1674 bp Neighborhood of RT #1 [2, 2051] RVT_N RVT-GII YkfC Feature: gene Location: 2-361 bp Feature: gene Location: 315-2051 bp Feature: domain Description: RVT_N Location: 438-681 bp Feature: domain Description: RVT_N Location: 438-681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 726-1374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 6-1374 bp Feature: domain Description: YkfC Location: 1584-1674 bp Feature: domain Description: YkfC Location: 1584-1674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: WCVG01000124.1 Bacteroides uniformis strain BIOML-A53 scaffold124_size2304, whole genome shotgun sequence (2304 bp)
Overview 1 RT 1: 2-2278 bp Neighborhood of RT #1 [2, 2278] RVT_N RVT-GII GIIM Feature: gene Location: 2-361 bp Feature: gene Location: 315-1982 bp Feature: domain Description: RVT_N Location: 369-612 bp Feature: domain Description: RVT_N Location: 3 69-612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 657-1305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 657-13 05 bp Feature: domain Description: GIIM Note: maturase Location: 1359-1590 bp Feature: domain Description: GIIM Note: maturase Location: 13 59-1590 bp Feature: gene Location: 1964-2278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCVG01000015.1 Bacteroides uniformis strain BIOML-A53 scaffold15_size97054, whole genome shotgun sequence (97054 bp)
Overview 1 RT 1: 72056-75909 bp Neighborhood of RT #1 [72056, 76736] TraG-D_C RVT-GII Intron_maturas2 HNHc YWFCY Feature: gene Location: 72056-72199 bp Feature: gene Location: 72220-73389 bp Feature: domain Description: TraG-D_C Location: 72745-73078 bp Feature: domain Description: TraG-D_C Location: 7274 5-73078 bp Feature: gene Location: 73376-75181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73640-74462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7364 0-74 4 62 bp Feature: domain Description: Intron_maturas2 Location: 74540-74870 bp Feature: domain Description: Intron_maturas2 Location: 74 54 0-74 870 bp Feature: domain Description: HNHc Note: nucleases Location: 75014-75104 bp Feature: domain Description: HNHc Note: nucleases Location: 75014 -75104 bp Feature: gene Location: 75183-75698 bp Feature: gene Location: 75726-76736 bp Feature: domain Description: YWFCY Location: 75732-75909 bp Feature: domain Description: YWFCY Location: 75732-75909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293)

Seq: WCVG01000019.1 Bacteroides uniformis strain BIOML-A53 scaffold19_size87457, whole genome shotgun sequence (87457 bp)
Overview 1 RT 1: 66086-70309 bp Neighborhood of RT #1 [66086, 70309] TraG-D_C RVT-GII Intron_maturas2 Feature: gene Location: 66086-66499 bp Feature: gene Location: 66795-67964 bp Feature: domain Description: TraG-D_C Location: 67311-67644 bp Feature: domain Description: TraG-D_C Location: 67311-67644 bp Feature: gene Location: 67954-69816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68278-69100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68278-69100 bp Feature: domain Description: Intron_maturas2 Location: 69208-69478 bp Feature: domain Description: Intron_maturas2 Location: 69208-69478 bp Feature: gene Location: 69858-70103 bp Feature: gene Location: 70097-70309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCVG01000001.1 Bacteroides uniformis strain BIOML-A53 scaffold1_size313776, whole genome shotgun sequence (313776 bp)
Overview 1 RT 1: 284022-289126 bp Neighborhood of RT #1 [284022, 289126] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 284022-285425 bp Feature: gene Location: 285636-286565 bp Feature: domain Description: Toprim_2 Location: 286188-286476 bp Feature: domain Description: Toprim_2 Location: 286 188-286 476 bp Feature: gene Location: 286537-288345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 286801-287623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 286 801-2876 23 bp Feature: domain Description: Intron_maturas2 Location: 287692-288001 bp Feature: domain Description: Intron_maturas2 Location: 2876 92-288001 bp Feature: gene Location: 288634-288777 bp Feature: gene Location: 288893-289126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCVG01000049.1 Bacteroides uniformis strain BIOML-A53 scaffold49_size32961, whole genome shotgun sequence (32961 bp)
Overview 1 RT 1: 22880-27757 bp Neighborhood of RT #1 [22880, 27771] BF2867_like_N Avd_like RVT-DGRs MutS_I HTH_18 Feature: gene Location: 22880-24433 bp Feature: domain Description: BF2867_like_N Location: 22916-23441 bp Feature: domain Description: BF2867 _like_N Location: 22916-23441 bp Feature: gene Location: 24503-24877 bp Feature: domain Description: Avd_like Location: 24530-24836 bp Feature: domain Description: Avd_like Location: 24530-24836 bp Feature: gene Location: 25161-26435 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25386-26076 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25386-2607 6 bp Feature: gene Location: 26432-26890 bp Feature: domain Description: MutS_I Location: 26477-26672 bp Feature: domain Description: MutS_I Location: 2647 7 -2667 2 bp Feature: gene Location: 26914-27771 bp Feature: domain Description: HTH_18 Location: 27523-27757 bp Feature: domain Description: HTH_18 Location: 27 523-27 7 57 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BF2867_like_N (cd13120), Avd_like (cd16376), RVT-DGRs, MutS_I (pfam01624), HTH_18 (pfam12833)

Seq: WCVG01000087.1 Bacteroides uniformis strain BIOML-A53 scaffold87_size11130, whole genome shotgun sequence (11130 bp)
Overview 1 RT 1: 3-4888 bp Neighborhood of RT #1 [3, 4888] YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 3-881 bp Feature: domain Description: YWFCY Location: 6-141 bp Feature: domain Description: YWFCY Location: 6-141 bp Feature: gene Location: 1518-3170 bp Feature: domain Description: RVT_N Location: 1572-1815 bp Feature: domain Description: RVT_N Location: 1572-18 15 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1860-2508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18 60-2508 bp Feature: domain Description: GIIM Note: maturase Location: 2562-2793 bp Feature: domain Description: GIIM Note: maturase Location: 2562-2793 bp Feature: gene Location: 3175-4380 bp Feature: domain Description: TraG-D_C Location: 3757-4087 bp Feature: domain Description: TraG-D_C Location: 3757-408 7 bp Feature: gene Location: 4475-4888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: WCVG01000098.1 Bacteroides uniformis strain BIOML-A53 scaffold98_size6576, whole genome shotgun sequence (6576 bp)
Overview 1 RT 1: 2978-5491 bp Neighborhood of RT #1 [2978, 5529] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 2978-3427 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: domain Description: GDP_FS_SDR_e Location: 29 9 9 -3401 bp Feature: gene Location: 3420-4193 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: gene Location: 4784-4918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-489 8 bp Feature: gene Location: 4940-5263 bp Feature: gene Location: 5308-5529 bp Feature: domain Description: Gmd Location: 5332-5491 bp Feature: domain Description: Gmd Location: 5332-549 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)