myRT

myRT report for GCA_009019905.1_ASM901990v1

Download annotations/find similar RTs

Seq: WCVB01000100.1 Bacteroides uniformis strain BIOML-A48 scaffold100_size6799, whole genome shotgun sequence (6799 bp)
Overview 1 RT 1: 2978-5491 bp Neighborhood of RT #1 [2978, 5529] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 2978-3427 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: gene Location: 3420-4193 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-41 67 bp Feature: gene Location: 4784-4918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: gene Location: 4940-5263 bp Feature: gene Location: 5308-5529 bp Feature: domain Description: Gmd Location: 5332-5491 bp Feature: domain Description: Gmd Location: 5332-5491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)

Seq: WCVB01000003.1 Bacteroides uniformis strain BIOML-A48 scaffold3_size188756, whole genome shotgun sequence (188756 bp)
Overview 1 RT 1: 143529-148633 bp Neighborhood of RT #1 [143529, 148633] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 143529-144932 bp Feature: gene Location: 145143-146072 bp Feature: domain Description: Toprim_2 Location: 145695-145983 bp Feature: domain Description: Toprim_2 Location: 145695-145983 bp Feature: gene Location: 146044-147852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146308-147130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146308-147130 bp Feature: domain Description: Intron_maturas2 Location: 147199-147508 bp Feature: domain Description: Intron_maturas2 Location: 147199-147508 bp Feature: gene Location: 148141-148284 bp Feature: gene Location: 148400-148633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCVB01000057.1 Bacteroides uniformis strain BIOML-A48 scaffold57_size27250, whole genome shotgun sequence (27250 bp)
Overview 1 RT 1: 272-4492 bp 2 RT 2: 20325-24161 bp Neighborhood of RT #1 [272, 4512] RVT_N RVT-GII YkfC HTH_ARAC Neighborhood of RT #2 [20325, 24161] TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 272-2008 bp Feature: domain Description: RVT_N Location: 395-638 bp Feature: domain Description: RVT_N Location: 3 95-63 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683 -13 3 1 bp Feature: domain Description: YkfC Location: 1541-1631 bp Feature: domain Description: YkfC Location: 1541-163 1 bp Feature: gene Location: 1962-3212 bp Feature: gene Location: 3382-4512 bp Feature: domain Description: HTH_ARAC Location: 4246-4492 bp Feature: domain Description: HTH_ARAC Location: 4246-4492 bp Feature: gene Location: 20325-20738 bp Feature: gene Location: 20833-22038 bp Feature: domain Description: TraG-D_C Location: 21415-21745 bp Feature: domain Description: TraG-D_C Location: 21415-21745 bp Feature: gene Location: 22043-23695 bp Feature: domain Description: RVT_N Location: 22097-22340 bp Feature: domain Description: RVT_N Location: 22097-223 40 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22385-23033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223 85-23 03 3 bp Feature: domain Description: GIIM Note: maturase Location: 23087-23318 bp Feature: domain Description: GIIM Note: maturase Location: 23 087-23 3 18 bp Feature: gene Location: 23802-23966 bp Feature: gene Location: 24012-24161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HTH_ARAC (smart00342), TraG-D_C (pfam12696), GIIM (pfam08388)

Seq: WCVB01000064.1 Bacteroides uniformis strain BIOML-A48 scaffold64_size19994, whole genome shotgun sequence (19994 bp)
Overview 1 RT 1: 16017-19968 bp Neighborhood of RT #1 [16017, 19968] cNMP_binding RVT_N RVT-GII GIIM Feature: gene Location: 16017-16583 bp Feature: domain Description: cNMP_binding Location: 16104-16365 bp Feature: domain Description: cNMP_binding Location: 16104 -16365 bp Feature: gene Location: 16723-18051 bp Feature: gene Location: 18005-19672 bp Feature: domain Description: RVT_N Location: 18059-18302 bp Feature: domain Description: RVT_N Location: 18059-18302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18347-18995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1834 7-18995 bp Feature: domain Description: GIIM Note: maturase Location: 19049-19280 bp Feature: domain Description: GIIM Note: maturase Location: 1904 9-19280 bp Feature: gene Location: 19687-19968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCVB01000085.1 Bacteroides uniformis strain BIOML-A48 scaffold85_size12956, whole genome shotgun sequence (12956 bp)
Overview 1 RT 1: 3197-7752 bp Neighborhood of RT #1 [3197, 7766] AbiEii AbiEi_3_N RVT-DGRs MutS_I HTH_18 Feature: gene Location: 3197-4210 bp Feature: domain Description: AbiEii Location: 3323-4157 bp Feature: domain Description: AbiEii Location: 3323-415 7 bp Feature: gene Location: 4207-4803 bp Feature: domain Description: AbiEi_3_N Location: 4282-4525 bp Feature: domain Description: AbiEi_3_N Location: 4282-45 25 bp Feature: gene Location: 5156-6430 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5381-6071 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5 381-6071 bp Feature: gene Location: 6427-6885 bp Feature: domain Description: MutS_I Location: 6472-6667 bp Feature: domain Description: MutS_I Location: 6472-6667 bp Feature: gene Location: 6909-7766 bp Feature: domain Description: HTH_18 Location: 7518-7752 bp Feature: domain Description: HTH_18 Location: 75 18-775 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), RVT-DGRs, MutS_I (pfam01624), HTH_18 (pfam12833)

Seq: WCVB01000095.1 Bacteroides uniformis strain BIOML-A48 scaffold95_size7704, whole genome shotgun sequence (7704 bp)
Overview 1 RT 1: 135-4358 bp Neighborhood of RT #1 [135, 4358] TraG-D_C RVT-GII Intron_maturas2 Feature: gene Location: 135-548 bp Feature: gene Location: 844-2025 bp Feature: domain Description: TraG-D_C Location: 1372-1705 bp Feature: domain Description: TraG-D_C Location: 1372-1705 bp Feature: gene Location: 2003-3805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2267-3089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226 7-3089 bp Feature: domain Description: Intron_maturas2 Location: 3197-3467 bp Feature: domain Description: Intron_maturas2 Location: 3197-346 7 bp Feature: gene Location: 3907-4167 bp Feature: gene Location: 4128-4358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348)