myRT

myRT report for GCA_009019935.1_ASM901993v1

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Seq: WCVA01000139.1 Bacteroides uniformis strain BIOML-A47 scaffold139_size2420, whole genome shotgun sequence (2420 bp)
Overview 1 RT 1: 123-2241 bp Neighborhood of RT #1 [123, 2241] RVT_N RVT-GII GIIM Feature: gene Location: 123-1775 bp Feature: domain Description: RVT_N Location: 177-420 bp Feature: domain Description: RVT_N Location: 1 77-420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1 1 1 3 bp Feature: domain Description: GIIM Note: maturase Location: 1167-1398 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 67-1 398 bp Feature: gene Location: 2092-2241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCVA01000154.1 Bacteroides uniformis strain BIOML-A47 scaffold154_size1711, whole genome shotgun sequence (1711 bp)
Overview 1 RT 1: 131-938 bp Neighborhood of RT #1 [131, 1432] RVT-DGRs Feature: gene Location: 131-1432 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 344-938 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 344-938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCVA01000003.1 Bacteroides uniformis strain BIOML-A47 scaffold3_size167186, whole genome shotgun sequence (167186 bp)
Overview 1 RT 1: 125840-130944 bp Neighborhood of RT #1 [125840, 130944] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 125840-127243 bp Feature: gene Location: 127454-128383 bp Feature: domain Description: Toprim_2 Location: 128006-128294 bp Feature: domain Description: Toprim_2 Location: 128006-128294 bp Feature: gene Location: 128355-130163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128619-129441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128619-129441 bp Feature: domain Description: Intron_maturas2 Location: 129510-129819 bp Feature: domain Description: Intron_maturas2 Location: 129510-129819 bp Feature: gene Location: 130452-130595 bp Feature: gene Location: 130711-130944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCVA01000049.1 Bacteroides uniformis strain BIOML-A47 scaffold49_size31397, whole genome shotgun sequence (31397 bp)
Overview 1 RT 1: 1889-6405 bp Neighborhood of RT #1 [1889, 6458] HTH_18 MutS_I RVT-DGRs AbiEi_3_N AbiEii Feature: gene Location: 1889-2746 bp Feature: domain Description: HTH_18 Location: 2498-2732 bp Feature: domain Description: HTH_18 Location: 24 98-2732 bp Feature: gene Location: 2770-3228 bp Feature: domain Description: MutS_I Location: 2815-3010 bp Feature: domain Description: MutS_I Location: 2815-3010 bp Feature: gene Location: 3225-4499 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3450-4140 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 34 50-4 14 0 bp Feature: gene Location: 4852-5448 bp Feature: domain Description: AbiEi_3_N Location: 4927-5170 bp Feature: domain Description: AbiEi_3_N Location: 4 927-5170 bp Feature: gene Location: 5445-6458 bp Feature: domain Description: AbiEii Location: 5571-6405 bp Feature: domain Description: AbiEii Location: 5571-64 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_18 (pfam12833), MutS_I (pfam01624), RVT-DGRs, AbiEi_3_N (pfam17194), AbiEii (pfam08843)

Seq: WCVA01000059.1 Bacteroides uniformis strain BIOML-A47 scaffold59_size18559, whole genome shotgun sequence (18559 bp)
Overview 1 RT 1: 272-3778 bp Neighborhood of RT #1 [272, 3996] RVT_N RVT-GII GIIM cNMP_binding Feature: gene Location: 272-2008 bp Feature: domain Description: RVT_N Location: 395-638 bp Feature: domain Description: RVT_N Location: 395 -638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1331 bp Feature: domain Description: GIIM Note: maturase Location: 1385-1616 bp Feature: domain Description: GIIM Note: maturase Location: 1385 -1616 bp Feature: gene Location: 1962-3290 bp Feature: gene Location: 3430-3996 bp Feature: domain Description: cNMP_binding Location: 3517-3778 bp Feature: domain Description: cNMP_binding Location: 35 17-3778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), cNMP_binding (pfam00027)

Seq: WCVA01000076.1 Bacteroides uniformis strain BIOML-A47 scaffold76_size13388, whole genome shotgun sequence (13388 bp)
Overview 1 RT 1: 1-3782 bp Neighborhood of RT #1 [1, 3802] RVT-GII YkfC HTH_ARAC Feature: gene Location: 1-1299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-6 22 bp Feature: domain Description: YkfC Location: 832-922 bp Feature: domain Description: YkfC Location: 832-922 bp Feature: gene Location: 1498-2502 bp Feature: gene Location: 2672-3802 bp Feature: domain Description: HTH_ARAC Location: 3536-3782 bp Feature: domain Description: HTH_ARAC Location: 3536 -3782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YkfC (COG3344), HTH_ARAC (smart00342)

Seq: WCVA01000091.1 Bacteroides uniformis strain BIOML-A47 scaffold91_size7664, whole genome shotgun sequence (7664 bp)
Overview 1 RT 1: 135-4358 bp Neighborhood of RT #1 [135, 4358] TraG-D_C RVT-GII Intron_maturas2 Feature: gene Location: 135-548 bp Feature: gene Location: 844-2025 bp Feature: domain Description: TraG-D_C Location: 1372-1705 bp Feature: domain Description: TraG-D_C Location: 137 2-17 05 bp Feature: gene Location: 2003-3805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2267-3089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2267 -3089 bp Feature: domain Description: Intron_maturas2 Location: 3197-3467 bp Feature: domain Description: Intron_maturas2 Location: 3197 -3467 bp Feature: gene Location: 3907-4167 bp Feature: gene Location: 4128-4358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCVA01000098.1 Bacteroides uniformis strain BIOML-A47 scaffold98_size6799, whole genome shotgun sequence (6799 bp)
Overview 1 RT 1: 2978-5491 bp Neighborhood of RT #1 [2978, 5529] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 2978-3427 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: gene Location: 3420-4193 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: gene Location: 4784-4918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478 7-48 98 bp Feature: gene Location: 4940-5263 bp Feature: gene Location: 5308-5529 bp Feature: domain Description: Gmd Location: 5332-5491 bp Feature: domain Description: Gmd Location: 5332-5491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)