myRT

myRT report for GCA_009019945.1_ASM901994v1

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Seq: WCUZ01000038.1 Bacteroides uniformis strain BIOML-A46 scaffold38_size52401, whole genome shotgun sequence (52401 bp)
Overview 1 RT 1: 42642-47197 bp Neighborhood of RT #1 [42642, 47211] AbiEii AbiEi_3_N RVT-DGRs MutS_I HTH_18 Feature: gene Location: 42642-43655 bp Feature: domain Description: AbiEii Location: 42768-43602 bp Feature: domain Description: AbiEii Location: 42768-43602 bp Feature: gene Location: 43652-44248 bp Feature: domain Description: AbiEi_3_N Location: 43727-43970 bp Feature: domain Description: AbiEi_3_N Location: 43727-43970 bp Feature: gene Location: 44601-45875 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44826-45516 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44826-4551 6 bp Feature: gene Location: 45872-46330 bp Feature: domain Description: MutS_I Location: 45917-46112 bp Feature: domain Description: MutS_I Location: 4591 7-461 1 2 bp Feature: gene Location: 46354-47211 bp Feature: domain Description: HTH_18 Location: 46963-47197 bp Feature: domain Description: HTH_1 8 Location: 46963-471 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), RVT-DGRs, MutS_I (pfam01624), HTH_18 (pfam12833)

Seq: WCUZ01000003.1 Bacteroides uniformis strain BIOML-A46 scaffold3_size184996, whole genome shotgun sequence (184996 bp)
Overview 1 RT 1: 143530-148634 bp Neighborhood of RT #1 [143530, 148634] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 143530-144933 bp Feature: gene Location: 145144-146073 bp Feature: domain Description: Toprim_2 Location: 145696-145984 bp Feature: domain Description: Toprim_2 Location: 145696-145984 bp Feature: gene Location: 146045-147853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146309-147131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146309-147131 bp Feature: domain Description: Intron_maturas2 Location: 147200-147509 bp Feature: domain Description: Intron_maturas2 Location: 1472 00-147509 bp Feature: gene Location: 148142-148285 bp Feature: gene Location: 148401-148634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCUZ01000054.1 Bacteroides uniformis strain BIOML-A46 scaffold54_size25989, whole genome shotgun sequence (25989 bp)
Overview 1 RT 1: 3-5269 bp 2 RT 2: 21102-24938 bp Neighborhood of RT #1 [3, 5289] RVT_N RVT-GII YkfC HTH_ARAC Neighborhood of RT #2 [21102, 24938] TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 3-443 bp Feature: gene Location: 1049-2785 bp Feature: domain Description: RVT_N Location: 1172-1415 bp Feature: domain Description: RVT_N Location: 1172-1415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1460-2108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1460-2108 bp Feature: domain Description: YkfC Location: 2318-2408 bp Feature: domain Description: YkfC Location: 23 18-2408 bp Feature: gene Location: 2739-3989 bp Feature: gene Location: 4159-5289 bp Feature: domain Description: HTH_ARAC Location: 5023-5269 bp Feature: domain Description: HTH_ARAC Location: 5023 -5269 bp Feature: gene Location: 21102-21515 bp Feature: gene Location: 21610-22815 bp Feature: domain Description: TraG-D_C Location: 22192-22522 bp Feature: domain Description: TraG-D_C Location: 22192-22522 bp Feature: gene Location: 22820-24472 bp Feature: domain Description: RVT_N Location: 22874-23117 bp Feature: domain Description: RVT_N Location: 22874-23 117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23162-23810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 162-23 810 bp Feature: domain Description: GIIM Note: maturase Location: 23864-24095 bp Feature: domain Description: GIIM Note: maturase Location: 23 864-24095 bp Feature: gene Location: 24579-24743 bp Feature: gene Location: 24789-24938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HTH_ARAC (smart00342), TraG-D_C (pfam12696), GIIM (pfam08388)

Seq: WCUZ01000057.1 Bacteroides uniformis strain BIOML-A46 scaffold57_size21461, whole genome shotgun sequence (21461 bp)
Overview 1 RT 1: 16033-21327 bp Neighborhood of RT #1 [16033, 21327] YWFCY T4SS-DNA_transf RVT-GII Intron_maturas2 TraG-D_C Feature: gene Location: 16033-17046 bp Feature: domain Description: YWFCY Location: 16039-16216 bp Feature: domain Description: YWFCY Location: 16039-16216 bp Feature: domain Description: T4SS-DNA_transf Location: 16507-17014 bp Feature: domain Description: T4 SS-DNA_transf Location: 16507-17014 bp Feature: gene Location: 17295-17555 bp Feature: gene Location: 17597-19459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17921-18743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17921-1874 3 bp Feature: domain Description: Intron_maturas2 Location: 18851-19121 bp Feature: domain Description: Intron_maturas2 Location: 18851-19121 bp Feature: gene Location: 19437-20618 bp Feature: domain Description: TraG-D_C Location: 19965-20298 bp Feature: domain Description: TraG-D_C Location: 19965-20298 bp Feature: gene Location: 20914-21327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), T4SS-DNA_transf (pfam02534), RVT-GII, Intron_maturas2 (pfam01348), TraG-D_C (pfam12696)

Seq: WCUZ01000058.1 Bacteroides uniformis strain BIOML-A46 scaffold58_size20005, whole genome shotgun sequence (20005 bp)
Overview 1 RT 1: 16028-19979 bp Neighborhood of RT #1 [16028, 19979] cNMP_binding RVT_N RVT-GII GIIM Feature: gene Location: 16028-16594 bp Feature: domain Description: cNMP_binding Location: 16115-16376 bp Feature: domain Description: cNMP_binding Location: 16115 -16376 bp Feature: gene Location: 16734-18062 bp Feature: gene Location: 18016-19683 bp Feature: domain Description: RVT_N Location: 18070-18313 bp Feature: domain Description: RVT_N Location: 18070-18313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18358-19006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1835 8-19006 bp Feature: domain Description: GIIM Note: maturase Location: 19060-19291 bp Feature: domain Description: GIIM Note: maturase Location: 19060-19291 bp Feature: gene Location: 19698-19979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCUZ01000092.1 Bacteroides uniformis strain BIOML-A46 scaffold92_size7665, whole genome shotgun sequence (7665 bp)
Overview 1 RT 1: 2978-5491 bp Neighborhood of RT #1 [2978, 5529] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 2978-3427 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: gene Location: 3420-4193 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-416 7 bp Feature: gene Location: 4784-4918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: gene Location: 4940-5263 bp Feature: gene Location: 5308-5529 bp Feature: domain Description: Gmd Location: 5332-5491 bp Feature: domain Description: Gmd Location: 5332-5491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)