myRT

myRT report for GCA_009019975.1_ASM901997v1

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Seq: WCUY01000010.1 Bacteroides uniformis strain BIOML-A45 scaffold10_size118728, whole genome shotgun sequence (118728 bp)
Overview 1 RT 1: 3000-5513 bp Neighborhood of RT #1 [3000, 5551] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 3000-3449 bp Feature: domain Description: GDP_FS_SDR_e Location: 3021-3423 bp Feature: domain Description: GDP_FS_SDR_e Location: 3021 -3423 bp Feature: gene Location: 3442-4215 bp Feature: domain Description: GDP_FS_SDR_e Location: 3445-4189 bp Feature: domain Description: GDP_FS_SDR_e Location: 3445-41 89 bp Feature: gene Location: 4806-4940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4809-4920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4809-4920 bp Feature: gene Location: 4962-5285 bp Feature: gene Location: 5330-5551 bp Feature: domain Description: Gmd Location: 5354-5513 bp Feature: domain Description: Gmd Location: 5354-551 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)

Seq: WCUY01000153.1 Bacteroides uniformis strain BIOML-A45 scaffold277_size1341, whole genome shotgun sequence (1341 bp)
Overview 1 RT 1: 23-830 bp Neighborhood of RT #1 [23, 1324] RVT-DGRs Feature: gene Location: 23-1324 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 236-830 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 36-830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCUY01000002.1 Bacteroides uniformis strain BIOML-A45 scaffold2_size318118, whole genome shotgun sequence (318118 bp)
Overview 1 RT 1: 168235-174567 bp Neighborhood of RT #1 [168235, 174567] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 168235-169302 bp Feature: domain Description: AAA_25 Location: 168370-168832 bp Feature: domain Description: AAA_25 Location: 1683 70-16883 2 bp Feature: gene Location: 169463-169696 bp Feature: gene Location: 170244-172052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170508-171330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170508-1713 3 0 bp Feature: domain Description: Intron_maturas2 Location: 171399-171708 bp Feature: domain Description: Intron_maturas2 Location: 1713 99-171708 bp Feature: gene Location: 172024-172953 bp Feature: domain Description: Toprim_2 Location: 172576-172864 bp Feature: domain Description: Toprim_2 Location: 172576-172864 bp Feature: gene Location: 173164-174567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: WCUY01000036.1 Bacteroides uniformis strain BIOML-A45 scaffold36_size52445, whole genome shotgun sequence (52445 bp)
Overview 1 RT 1: 5213-9729 bp Neighborhood of RT #1 [5213, 9782] HTH_18 MutS_I RVT-DGRs AbiEi_3_N AbiEii Feature: gene Location: 5213-6070 bp Feature: domain Description: HTH_18 Location: 5822-6056 bp Feature: domain Description: HTH_18 Location: 5822-6056 bp Feature: gene Location: 6094-6552 bp Feature: domain Description: MutS_I Location: 6139-6334 bp Feature: domain Description: MutS_I Location: 6139-6334 bp Feature: gene Location: 6549-7823 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6774-7464 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6774 -74 64 bp Feature: gene Location: 8176-8772 bp Feature: domain Description: AbiEi_3_N Location: 8251-8494 bp Feature: domain Description: AbiEi_3_N Location: 8251-84 94 bp Feature: gene Location: 8769-9782 bp Feature: domain Description: AbiEii Location: 8895-9729 bp Feature: domain Description: AbiEii Location: 8895-9729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_18 (pfam12833), MutS_I (pfam01624), RVT-DGRs, AbiEi_3_N (pfam17194), AbiEii (pfam08843)

Seq: WCUY01000048.1 Bacteroides uniformis strain BIOML-A45 scaffold48_size27364, whole genome shotgun sequence (27364 bp)
Overview 1 RT 1: 802-7018 bp 2 RT 2: 22831-26694 bp Neighborhood of RT #1 [802, 7018] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Neighborhood of RT #2 [22831, 27071] HTH_ARAC RVT_N RVT-GII YkfC Feature: gene Location: 802-2052 bp Feature: domain Description: Relaxase Location: 904-1354 bp Feature: domain Description: Relaxase Location: 904-135 4 bp Feature: gene Location: 2085-3011 bp Feature: domain Description: YWFCY Location: 2094-2271 bp Feature: domain Description: YWFCY Location: 2094-2271 bp Feature: gene Location: 3648-5300 bp Feature: domain Description: RVT_N Location: 3702-3945 bp Feature: domain Description: RVT_N Location: 3702-3945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3990-4638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3990-4638 bp Feature: domain Description: GIIM Note: maturase Location: 4692-4923 bp Feature: domain Description: GIIM Note: maturase Location: 4692-4923 bp Feature: gene Location: 5305-6510 bp Feature: domain Description: TraG-D_C Location: 5887-6217 bp Feature: domain Description: TraG-D_C Location: 5 887-6217 bp Feature: gene Location: 6605-7018 bp Feature: gene Location: 22831-23961 bp Feature: domain Description: HTH_ARAC Location: 23695-23941 bp Feature: domain Description: HTH_ARAC Location: 23695 -23941 bp Feature: gene Location: 24131-25381 bp Feature: gene Location: 25335-27071 bp Feature: domain Description: RVT_N Location: 25458-25701 bp Feature: domain Description: RVT_N Location: 25 45 8-25 701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25746-26394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 746-26394 bp Feature: domain Description: YkfC Location: 26604-26694 bp Feature: domain Description: YkfC Location: 26604-26694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), HTH_ARAC (smart00342), YkfC (COG3344)

Seq: WCUY01000052.1 Bacteroides uniformis strain BIOML-A45 scaffold52_size22335, whole genome shotgun sequence (22335 bp)
Overview 1 RT 1: 18336-22287 bp Neighborhood of RT #1 [18336, 22287] cNMP_binding RVT_N RVT-GII GIIM Feature: gene Location: 18336-18902 bp Feature: domain Description: cNMP_binding Location: 18423-18684 bp Feature: domain Description: cNMP_binding Location: 18423-186 84 bp Feature: gene Location: 19042-20370 bp Feature: gene Location: 20324-21991 bp Feature: domain Description: RVT_N Location: 20378-20621 bp Feature: domain Description: RVT_N Location: 20378-206 21 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20666-21314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206 6 6 -21314 bp Feature: domain Description: GIIM Note: maturase Location: 21368-21599 bp Feature: domain Description: GIIM Note: maturase Location: 2136 8-21599 bp Feature: gene Location: 22006-22287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCUY01000053.1 Bacteroides uniformis strain BIOML-A45 scaffold53_size21505, whole genome shotgun sequence (21505 bp)
Overview 1 RT 1: 157-4380 bp Neighborhood of RT #1 [157, 4380] TraG-D_C RVT-GII Intron_maturas2 Feature: gene Location: 157-570 bp Feature: gene Location: 866-2047 bp Feature: domain Description: TraG-D_C Location: 1394-1727 bp Feature: domain Description: TraG-D_C Location: 1394-17 27 bp Feature: gene Location: 2025-3887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2349-3171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2349-317 1 bp Feature: domain Description: Intron_maturas2 Location: 3279-3549 bp Feature: domain Description: Intron_maturas2 Location: 327 9-3549 bp Feature: gene Location: 3929-4174 bp Feature: gene Location: 4150-4380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348)