myRT

myRT report for GCA_009019985.1_ASM901998v1

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Seq: WCUX01000119.1 Bacteroides uniformis strain BIOML-A44 scaffold121_size1040, whole genome shotgun sequence (1040 bp)
Overview 1 RT 1: 18-543 bp Neighborhood of RT #1 [18, 1037] RVT-DGRs Feature: gene Location: 18-1037 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27-543 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27-543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCUX01000036.1 Bacteroides uniformis strain BIOML-A44 scaffold36_size52448, whole genome shotgun sequence (52448 bp)
Overview 1 RT 1: 5213-9729 bp Neighborhood of RT #1 [5213, 9782] HTH_18 MutS_I RVT-DGRs AbiEi_3_N AbiEii Feature: gene Location: 5213-6070 bp Feature: domain Description: HTH_18 Location: 5822-6056 bp Feature: domain Description: HTH_18 Location: 582 2 -6056 bp Feature: gene Location: 6094-6552 bp Feature: domain Description: MutS_I Location: 6139-6334 bp Feature: domain Description: MutS_I Location: 6139-6334 bp Feature: gene Location: 6549-7823 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6774-7464 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6774-7464 bp Feature: gene Location: 8176-8772 bp Feature: domain Description: AbiEi_3_N Location: 8251-8494 bp Feature: domain Description: AbiEi_3_N Location: 82 51-8494 bp Feature: gene Location: 8769-9782 bp Feature: domain Description: AbiEii Location: 8895-9729 bp Feature: domain Description: AbiEii Location: 8895-972 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_18 (pfam12833), MutS_I (pfam01624), RVT-DGRs, AbiEi_3_N (pfam17194), AbiEii (pfam08843)

Seq: WCUX01000003.1 Bacteroides uniformis strain BIOML-A44 scaffold3_size297783, whole genome shotgun sequence (297783 bp)
Overview 1 RT 1: 147899-154231 bp Neighborhood of RT #1 [147899, 154231] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 147899-148966 bp Feature: domain Description: AAA_25 Location: 148034-148496 bp Feature: domain Description: AAA_25 Location: 14803 4-148496 bp Feature: gene Location: 149127-149360 bp Feature: gene Location: 149908-151716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150172-150994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150172-150994 bp Feature: domain Description: Intron_maturas2 Location: 151063-151372 bp Feature: domain Description: Intron_maturas2 Location: 151063 -1513 72 bp Feature: gene Location: 151706-152617 bp Feature: domain Description: Toprim_2 Location: 152240-152528 bp Feature: domain Description: Toprim_2 Location: 152240-152528 bp Feature: gene Location: 152828-154231 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: WCUX01000051.1 Bacteroides uniformis strain BIOML-A44 scaffold51_size23900, whole genome shotgun sequence (23900 bp)
Overview 1 RT 1: 19901-23852 bp Neighborhood of RT #1 [19901, 23852] cNMP_binding RVT_N RVT-GII GIIM Feature: gene Location: 19901-20467 bp Feature: domain Description: cNMP_binding Location: 19988-20249 bp Feature: domain Description: cNMP_binding Location: 19988-2024 9 bp Feature: gene Location: 20607-21935 bp Feature: gene Location: 21889-23556 bp Feature: domain Description: RVT_N Location: 21943-22186 bp Feature: domain Description: RVT_N Location: 2194 3-22186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22231-22879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22231-22879 bp Feature: domain Description: GIIM Note: maturase Location: 22933-23164 bp Feature: domain Description: GIIM Note: maturase Location: 22933-23164 bp Feature: gene Location: 23571-23852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCUX01000069.1 Bacteroides uniformis strain BIOML-A44 scaffold69_size14122, whole genome shotgun sequence (14122 bp)
Overview 1 RT 1: 3000-5513 bp Neighborhood of RT #1 [3000, 5551] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 3000-3449 bp Feature: domain Description: GDP_FS_SDR_e Location: 3021-3423 bp Feature: domain Description: GDP_FS_SDR_e Location: 3021-3423 bp Feature: gene Location: 3442-4215 bp Feature: domain Description: GDP_FS_SDR_e Location: 3445-4189 bp Feature: domain Description: GDP_FS_SDR_e Location: 3445 -4189 bp Feature: gene Location: 4806-4940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4809-4920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4809-4920 bp Feature: gene Location: 4962-5285 bp Feature: gene Location: 5330-5551 bp Feature: domain Description: Gmd Location: 5354-5513 bp Feature: domain Description: Gmd Location: 5 35 4-5 5 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)

Seq: WCUX01000070.1 Bacteroides uniformis strain BIOML-A44 scaffold70_size14891, whole genome shotgun sequence (14891 bp)
Overview 1 RT 1: 9582-14888 bp Neighborhood of RT #1 [9582, 14888] HTH_ARAC RVT_N RVT-GII YkfC Feature: gene Location: 9582-10712 bp Feature: domain Description: HTH_ARAC Location: 10446-10692 bp Feature: domain Description: HTH_ARAC Location: 10446 -106 92 bp Feature: gene Location: 10882-12132 bp Feature: gene Location: 12086-13822 bp Feature: domain Description: RVT_N Location: 12209-12452 bp Feature: domain Description: RVT_N Location: 12209-12452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12497-13145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12497-13145 bp Feature: domain Description: YkfC Location: 13355-13445 bp Feature: domain Description: YkfC Location: 13355-13445 bp Feature: gene Location: 14427-14888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: WCUX01000072.1 Bacteroides uniformis strain BIOML-A44 scaffold72_size13268, whole genome shotgun sequence (13268 bp)
Overview 1 RT 1: 6251-10087 bp Neighborhood of RT #1 [6251, 10087] TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 6251-6664 bp Feature: gene Location: 6759-7964 bp Feature: domain Description: TraG-D_C Location: 7341-7671 bp Feature: domain Description: TraG-D_C Location: 7 341-7 67 1 bp Feature: gene Location: 7969-9621 bp Feature: domain Description: RVT_N Location: 8023-8266 bp Feature: domain Description: RVT_N Location: 8023-8266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8311-8959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8311-8959 bp Feature: domain Description: GIIM Note: maturase Location: 9013-9244 bp Feature: domain Description: GIIM Note: maturase Location: 9013-9244 bp Feature: gene Location: 9728-9892 bp Feature: gene Location: 9938-10087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)