myRT

myRT report for GCA_009020155.1_ASM902015v1

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Seq: WCUN01000020.1 Bacteroides uniformis strain BIOML-A34 scaffold20_size117871, whole genome shotgun sequence (117871 bp)
Overview 1 RT 1: 2763-9275 bp 2 RT 2: 55153-59300 bp Neighborhood of RT #1 [2763, 9275] Relaxase YWFCY TrwB_AAD_bind RVT-GII Intron_maturas2 HNHc Neighborhood of RT #2 [55153, 59300] TipAS COG2369 LPD3 RVT-DGRs Feature: gene Location: 2763-4010 bp Feature: domain Description: Relaxase Location: 2955-3315 bp Feature: domain Description: Relaxase Location: 2955-331 5 bp Feature: gene Location: 4041-5582 bp Feature: domain Description: YWFCY Location: 4050-4227 bp Feature: domain Description: YWFCY Location: 4050-4227 bp Feature: domain Description: TrwB_AAD_bind Location: 5379-5571 bp Feature: domain Description: TrwB_AAD_bind Location: 5379-5571 bp Feature: gene Location: 6007-7977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6430-7252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6430-7252 bp Feature: domain Description: Intron_maturas2 Location: 7414-7633 bp Feature: domain Description: Intron_maturas2 Location: 741 4-7633 bp Feature: domain Description: HNHc Note: nucleases Location: 7798-7954 bp Feature: domain Description: HNHc Note: nucleases Location: 7798-7954 bp Feature: gene Location: 7964-8590 bp Feature: gene Location: 8709-9275 bp Feature: gene Location: 55153-56364 bp Feature: domain Description: TipAS Location: 55177-55480 bp Feature: domain Description: TipAS Location: 551 77-55480 bp Feature: domain Description: COG2369 Location: 55600-55786 bp Feature: domain Description: COG2369 Location: 55600-55786 bp Feature: domain Description: LPD3 Location: 56005-56287 bp Feature: domain Description: LPD3 Location: 56005-56287 bp Feature: gene Location: 56462-56695 bp Feature: gene Location: 57071-58372 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 57284-57878 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 57284-57878 bp Feature: gene Location: 58369-58854 bp Feature: gene Location: 59058-59300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), TrwB_AAD_bind (pfam10412), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), RVT-DGRs

Seq: WCUN01000021.1 Bacteroides uniformis strain BIOML-A34 scaffold21_size61010, whole genome shotgun sequence (61010 bp)
Overview 1 RT 1: 51274-56833 bp Neighborhood of RT #1 [51274, 56904] RVT-DGRs Dam Feature: gene Location: 51274-52173 bp Feature: gene Location: 52187-53623 bp Feature: gene Location: 53982-55454 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54321-54912 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5432 1-54912 bp Feature: gene Location: 55468-55878 bp Feature: gene Location: 56062-56904 bp Feature: domain Description: Dam Location: 56065-56833 bp Feature: domain Description: Dam Location: 56065-56833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Dam (pfam05869)

Seq: WCUN01000023.1 Bacteroides uniformis strain BIOML-A34 scaffold23_size53023, whole genome shotgun sequence (53023 bp)
Overview 1 RT 1: 2312-5142 bp Neighborhood of RT #1 [2312, 5142] RVT-DGRs Feature: gene Location: 2312-2545 bp Feature: gene Location: 2743-2898 bp Feature: gene Location: 2924-4225 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3137-3731 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 13 7-3 73 1 bp Feature: gene Location: 4225-4710 bp Feature: gene Location: 4900-5142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCUN01000002.1 Bacteroides uniformis strain BIOML-A34 scaffold2_size411395, whole genome shotgun sequence (411395 bp)
Overview 1 RT 1: 226365-229213 bp Neighborhood of RT #1 [226365, 229281] RVT-Retrons COG3943 Feature: gene Location: 226365-226520 bp Feature: gene Location: 226648-226863 bp Feature: gene Location: 226888-227745 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 227050-227575 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 227050-227575 bp Feature: gene Location: 227776-228651 bp Feature: gene Location: 228916-229281 bp Feature: domain Description: COG3943 Location: 228958-229213 bp Feature: domain Description: COG394 3 Location: 228958-229213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein )

Seq: WCUN01000052.1 Bacteroides uniformis strain BIOML-A34 scaffold52_size13846, whole genome shotgun sequence (13768 bp)
Overview 1 RT 1: 3618-9471 bp Neighborhood of RT #1 [3618, 9515] DUF3876 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Feature: gene Location: 3618-3980 bp Feature: domain Description: DUF3876 Location: 3684-3954 bp Feature: domain Description: DUF3876 Location: 3684-395 4 bp Feature: gene Location: 4184-5269 bp Feature: domain Description: Bac_Flav_CT_G Location: 4313-5261 bp Feature: domain Description: Bac_Flav_CT_G Location: 4313-5 261 bp Feature: gene Location: 5259-7067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5523-6345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 5 23-6345 bp Feature: domain Description: Intron_maturas2 Location: 6414-6726 bp Feature: domain Description: Intron_maturas2 Location: 6414-6726 bp Feature: domain Description: HNHc Note: nucleases Location: 6900-7041 bp Feature: domain Description: HNHc Note: nucleases Location: 6900-7041 bp Feature: gene Location: 7633-9183 bp Feature: domain Description: Bac_Flav_CT_G Location: 7636-9163 bp Feature: domain Description: Bac_Flav_CT_G Location: 7636-9163 bp Feature: gene Location: 9192-9515 bp Feature: domain Description: DUF4133 Location: 9207-9471 bp Feature: domain Description: DUF4133 Location: 9207-9471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571)

Seq: WCUN01000005.1 Bacteroides uniformis strain BIOML-A34 scaffold5_size415935, whole genome shotgun sequence (415935 bp)
Overview 1 RT 1: 184952-187035 bp Neighborhood of RT #1 [184952, 187061] Gmd RVT-GII GDP_FS_SDR_e Feature: gene Location: 184952-185173 bp Feature: domain Description: Gmd Location: 184976-185135 bp Feature: domain Description: Gmd Location: 184976 -185135 bp Feature: gene Location: 185218-185541 bp Feature: gene Location: 185563-185697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185566-185677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18556 6 -1856 77 bp Feature: gene Location: 185944-186081 bp Feature: gene Location: 186288-187061 bp Feature: domain Description: GDP_FS_SDR_e Location: 186291-187035 bp Feature: domain Description: GDP_FS_SDR_e Location: 186 291-187035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), RVT-GII, GDP_FS_SDR_e (cd05239)

Seq: WCUN01000009.1 Bacteroides uniformis strain BIOML-A34 scaffold9_size157380, whole genome shotgun sequence (157380 bp)
Overview 1 RT 1: 107755-110161 bp Neighborhood of RT #1 [107755, 110232] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 107755-108099 bp Feature: gene Location: 108092-108262 bp Feature: gene Location: 108377-109411 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 108587-109199 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 108587 -109199 bp Feature: gene Location: 109389-109760 bp Feature: gene Location: 109762-110232 bp Feature: domain Description: Phage_holin_4_1 Location: 109849-110161 bp Feature: domain Description: Phage_holin_4_1 Location: 109849-110161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)