myRT

myRT report for GCA_009020215.1_ASM902021v1

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Seq: WCUM01000010.1 Bacteroides uniformis strain BIOML-A33 scaffold10_size144001, whole genome shotgun sequence (144001 bp)
Overview 1 RT 1: 107755-110161 bp Neighborhood of RT #1 [107755, 110232] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 107755-108099 bp Feature: gene Location: 108092-108262 bp Feature: gene Location: 108377-109411 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 108587-109199 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 08587-1 091 99 bp Feature: gene Location: 109389-109760 bp Feature: gene Location: 109762-110232 bp Feature: domain Description: Phage_holin_4_1 Location: 109849-110161 bp Feature: domain Description: Phage_holin_4_1 Location: 1 09849-1 1 01 61 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WCUM01000014.1 Bacteroides uniformis strain BIOML-A33 scaffold14_size116561, whole genome shotgun sequence (116561 bp)
Overview 1 RT 1: 71286-73369 bp Neighborhood of RT #1 [71286, 73395] Gmd RVT-GII GDP_FS_SDR_e Feature: gene Location: 71286-71507 bp Feature: domain Description: Gmd Location: 71310-71469 bp Feature: domain Description: Gmd Location: 71310-71469 bp Feature: gene Location: 71552-71875 bp Feature: gene Location: 71897-72031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71900-72011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71900-72 011 bp Feature: gene Location: 72278-72415 bp Feature: gene Location: 72622-73395 bp Feature: domain Description: GDP_FS_SDR_e Location: 72625-73369 bp Feature: domain Description: GDP_FS_SDR_e Location: 72 62 5-73369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), RVT-GII, GDP_FS_SDR_e (cd05239)

Seq: WCUM01000018.1 Bacteroides uniformis strain BIOML-A33 scaffold18_size74512, whole genome shotgun sequence (74512 bp)
Overview 1 RT 1: 47882-51384 bp Neighborhood of RT #1 [47882, 52049] RVT-DGRs Phage_Mu_F Feature: gene Location: 47882-48124 bp Feature: gene Location: 48314-48799 bp Feature: gene Location: 48799-50100 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 49012-49606 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 49012-49606 bp Feature: gene Location: 50479-50712 bp Feature: gene Location: 50823-52049 bp Feature: domain Description: Phage_Mu_F Location: 51108-51384 bp Feature: domain Description: Phage_Mu_F Location: 51108-513 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_Mu_F (pfam04233)

Seq: WCUM01000001.1 Bacteroides uniformis strain BIOML-A33 scaffold1_size411395, whole genome shotgun sequence (411395 bp)
Overview 1 RT 1: 226365-229213 bp Neighborhood of RT #1 [226365, 229281] RVT-Retrons COG3943 Feature: gene Location: 226365-226520 bp Feature: gene Location: 226648-226863 bp Feature: gene Location: 226888-227745 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 227050-227575 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 227050-227575 bp Feature: gene Location: 227776-228651 bp Feature: gene Location: 228916-229281 bp Feature: domain Description: COG3943 Location: 228958-229213 bp Feature: domain Description: COG394 3 Location: 228958-229213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein )

Seq: WCUM01000023.1 Bacteroides uniformis strain BIOML-A33 scaffold23_size63672, whole genome shotgun sequence (63672 bp)
Overview 1 RT 1: 954-5101 bp Neighborhood of RT #1 [954, 5101] TipAS COG2369 LPD3 RVT-DGRs Feature: gene Location: 954-2165 bp Feature: domain Description: TipAS Location: 978-1281 bp Feature: domain Description: TipAS Location: 978-1281 bp Feature: domain Description: COG2369 Location: 1401-1587 bp Feature: domain Description: COG2369 Location: 1401-15 87 bp Feature: domain Description: LPD3 Location: 1806-2088 bp Feature: domain Description: LPD3 Location: 1806-2088 bp Feature: gene Location: 2263-2496 bp Feature: gene Location: 2872-4173 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3085-3679 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3085 -3679 bp Feature: gene Location: 4170-4655 bp Feature: gene Location: 4859-5101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), RVT-DGRs

Seq: WCUM01000024.1 Bacteroides uniformis strain BIOML-A33 scaffold24_size61010, whole genome shotgun sequence (61010 bp)
Overview 1 RT 1: 51274-56833 bp Neighborhood of RT #1 [51274, 56904] RVT-DGRs Dam Feature: gene Location: 51274-52173 bp Feature: gene Location: 52187-53623 bp Feature: gene Location: 53982-55454 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54321-54912 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54321-54912 bp Feature: gene Location: 55468-55878 bp Feature: gene Location: 56062-56904 bp Feature: domain Description: Dam Location: 56065-56833 bp Feature: domain Description: Dam Location: 56 06 5-56 833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Dam (pfam05869)

Seq: WCUM01000034.1 Bacteroides uniformis strain BIOML-A33 scaffold34_size31046, whole genome shotgun sequence (31386 bp)
Overview 1 RT 1: 22112-27335 bp Neighborhood of RT #1 [22112, 27346] RVT-GII Intron_maturas2 HNHc YWFCY TrwB_AAD_bind Feature: gene Location: 22112-22678 bp Feature: gene Location: 22797-23423 bp Feature: gene Location: 23410-25380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23833-24655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23833-24655 bp Feature: domain Description: Intron_maturas2 Location: 24817-25036 bp Feature: domain Description: Intron_maturas2 Location: 24817 -25036 bp Feature: domain Description: HNHc Note: nucleases Location: 25201-25357 bp Feature: domain Description: HNHc Note: nucleases Location: 25201-25357 bp Feature: gene Location: 25542-25697 bp Feature: gene Location: 25805-27346 bp Feature: domain Description: YWFCY Location: 25814-25991 bp Feature: domain Description: YWFCY Location: 25814-25991 bp Feature: domain Description: TrwB_AAD_bind Location: 27143-27335 bp Feature: domain Description: TrwB_AAD_bind Location: 27 143-27 335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293), TrwB_AAD_bind (pfam10412)

Seq: WCUM01000063.1 Bacteroides uniformis strain BIOML-A33 scaffold63_size2742, whole genome shotgun sequence (2742 bp)
Overview 1 RT 1: 1-2585 bp Neighborhood of RT #1 [1, 2585] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-159 bp Feature: gene Location: 269-2077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 533-1355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 533-1355 bp Feature: domain Description: Intron_maturas2 Location: 1424-1736 bp Feature: domain Description: Intron_maturas2 Location: 1424-1736 bp Feature: domain Description: HNHc Note: nucleases Location: 1910-2051 bp Feature: domain Description: HNHc Note: nucleases Location: 1910-2051 bp Feature: gene Location: 2085-2585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)