myRT

myRT report for GCA_009020225.1_ASM902022v1

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Seq: WCUL01000015.1 Bacteroides uniformis strain BIOML-A32 scaffold15_size74512, whole genome shotgun sequence (74512 bp)
Overview 1 RT 1: 47882-51384 bp Neighborhood of RT #1 [47882, 52049] RVT-DGRs Phage_Mu_F Feature: gene Location: 47882-48124 bp Feature: gene Location: 48314-48799 bp Feature: gene Location: 48799-50100 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 49012-49606 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4901 2-49606 bp Feature: gene Location: 50479-50712 bp Feature: gene Location: 50823-52049 bp Feature: domain Description: Phage_Mu_F Location: 51108-51384 bp Feature: domain Description: Phage_Mu_F Location: 51 1 08-51 384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_Mu_F (pfam04233)

Seq: WCUL01000020.1 Bacteroides uniformis strain BIOML-A32 scaffold20_size109997, whole genome shotgun sequence (110045 bp)
Overview 1 RT 1: 1326-5473 bp Neighborhood of RT #1 [1326, 5473] TipAS COG2369 LPD3 RVT-DGRs Feature: gene Location: 1326-2537 bp Feature: domain Description: TipAS Location: 1350-1653 bp Feature: domain Description: TipAS Location: 1350-1653 bp Feature: domain Description: COG2369 Location: 1773-1959 bp Feature: domain Description: COG2 369 Location: 1773-1959 bp Feature: domain Description: LPD3 Location: 2178-2460 bp Feature: domain Description: LPD3 Location: 2 178-2 460 bp Feature: gene Location: 2635-2868 bp Feature: gene Location: 3244-4545 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3457-4051 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3457-4051 bp Feature: gene Location: 4542-5027 bp Feature: gene Location: 5231-5473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), RVT-DGRs

Seq: WCUL01000021.1 Bacteroides uniformis strain BIOML-A32 scaffold21_size61010, whole genome shotgun sequence (61010 bp)
Overview 1 RT 1: 51274-56833 bp Neighborhood of RT #1 [51274, 56904] RVT-DGRs Dam Feature: gene Location: 51274-52173 bp Feature: gene Location: 52187-53623 bp Feature: gene Location: 53982-55454 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54321-54912 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 543 21-54912 bp Feature: gene Location: 55468-55878 bp Feature: gene Location: 56062-56904 bp Feature: domain Description: Dam Location: 56065-56833 bp Feature: domain Description: Dam Location: 56065-5683 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Dam (pfam05869)

Seq: WCUL01000004.1 Bacteroides uniformis strain BIOML-A32 scaffold4_size416044, whole genome shotgun sequence (416044 bp)
Overview 1 RT 1: 185061-187144 bp Neighborhood of RT #1 [185061, 187170] Gmd RVT-GII GDP_FS_SDR_e Feature: gene Location: 185061-185282 bp Feature: domain Description: Gmd Location: 185085-185244 bp Feature: domain Description: Gmd Location: 185085-18524 4 bp Feature: gene Location: 185327-185650 bp Feature: gene Location: 185672-185806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185675-185786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185675-185786 bp Feature: gene Location: 186053-186190 bp Feature: gene Location: 186397-187170 bp Feature: domain Description: GDP_FS_SDR_e Location: 186400-187144 bp Feature: domain Description: GDP_FS_SDR_e Location: 1864 00-18714 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), RVT-GII, GDP_FS_SDR_e (cd05239)

Seq: WCUL01000062.1 Bacteroides uniformis strain BIOML-A32 scaffold62_size2742, whole genome shotgun sequence (2742 bp)
Overview 1 RT 1: 1-2585 bp Neighborhood of RT #1 [1, 2585] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-159 bp Feature: gene Location: 269-2077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 533-1355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 33-135 5 bp Feature: domain Description: Intron_maturas2 Location: 1424-1736 bp Feature: domain Description: Intron_maturas2 Location: 1424-1736 bp Feature: domain Description: HNHc Note: nucleases Location: 1910-2051 bp Feature: domain Description: HNHc Note: nucleases Location: 1910-205 1 bp Feature: gene Location: 2085-2585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WCUL01000067.1 Bacteroides uniformis strain BIOML-A32 scaffold67_size2522, whole genome shotgun sequence (2522 bp)
Overview 1 RT 1: 437-2384 bp Neighborhood of RT #1 [437, 2407] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 437-2407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 860-1682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86 0-16 82 bp Feature: domain Description: Intron_maturas2 Location: 1844-2063 bp Feature: domain Description: Intron_maturas2 Location: 1844-206 3 bp Feature: domain Description: HNHc Note: nucleases Location: 2228-2384 bp Feature: domain Description: HNHc Note: nucleases Location: 2228-2384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WCUL01000007.1 Bacteroides uniformis strain BIOML-A32 scaffold7_size411399, whole genome shotgun sequence (411399 bp)
Overview 1 RT 1: 226365-229213 bp Neighborhood of RT #1 [226365, 229281] RVT-Retrons COG3943 Feature: gene Location: 226365-226520 bp Feature: gene Location: 226648-226863 bp Feature: gene Location: 226888-227745 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 227050-227575 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 227 050-227 57 5 bp Feature: gene Location: 227776-228651 bp Feature: gene Location: 228916-229281 bp Feature: domain Description: COG3943 Location: 228958-229213 bp Feature: domain Description: COG3943 Location: 228958-229213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein )

Seq: WCUL01000009.1 Bacteroides uniformis strain BIOML-A32 scaffold9_size156661, whole genome shotgun sequence (156661 bp)
Overview 1 RT 1: 107755-110161 bp Neighborhood of RT #1 [107755, 110232] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 107755-108099 bp Feature: gene Location: 108092-108262 bp Feature: gene Location: 108377-109411 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 108587-109199 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 108 58 7-109199 bp Feature: gene Location: 109389-109760 bp Feature: gene Location: 109762-110232 bp Feature: domain Description: Phage_holin_4_1 Location: 109849-110161 bp Feature: domain Description: Phage_holin_4_1 Location: 1098 49-110161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)