myRT

myRT report for GCA_009020265.1_ASM902026v1

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Seq: WCUJ01000010.1 Bacteroides uniformis strain BIOML-A30 scaffold10_size156661, whole genome shotgun sequence (156661 bp)
Overview 1 RT 1: 107755-110161 bp Neighborhood of RT #1 [107755, 110232] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 107755-108099 bp Feature: gene Location: 108092-108262 bp Feature: gene Location: 108377-109411 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 108587-109199 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 08587-1 091 99 bp Feature: gene Location: 109389-109760 bp Feature: gene Location: 109762-110232 bp Feature: domain Description: Phage_holin_4_1 Location: 109849-110161 bp Feature: domain Description: Phage_holin_4_1 Location: 1 09849-1 1 01 61 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WCUJ01000019.1 Bacteroides uniformis strain BIOML-A30 scaffold19_size62597, whole genome shotgun sequence (62597 bp)
Overview 1 RT 1: 52861-58420 bp Neighborhood of RT #1 [52861, 58491] RVT-DGRs Dam Feature: gene Location: 52861-53760 bp Feature: gene Location: 53774-55210 bp Feature: gene Location: 55569-57041 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 55908-56499 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 55908-56499 bp Feature: gene Location: 57055-57465 bp Feature: gene Location: 57649-58491 bp Feature: domain Description: Dam Location: 57652-58420 bp Feature: domain Description: Dam Location: 57652 -5842 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Dam (pfam05869)

Seq: WCUJ01000022.1 Bacteroides uniformis strain BIOML-A30 scaffold22_size53395, whole genome shotgun sequence (53395 bp)
Overview 1 RT 1: 2684-5514 bp Neighborhood of RT #1 [2684, 5514] RVT-DGRs Feature: gene Location: 2684-2917 bp Feature: gene Location: 3115-3270 bp Feature: gene Location: 3296-4597 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3509-4103 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 509-4103 bp Feature: gene Location: 4597-5082 bp Feature: gene Location: 5272-5514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCUJ01000029.1 Bacteroides uniformis strain BIOML-A30 scaffold29_size31048, whole genome shotgun sequence (31329 bp)
Overview 1 RT 1: 22055-27278 bp Neighborhood of RT #1 [22055, 27289] RVT-GII Intron_maturas2 HNHc YWFCY TrwB_AAD_bind Feature: gene Location: 22055-22621 bp Feature: gene Location: 22740-23366 bp Feature: gene Location: 23353-25323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23776-24598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23776-24 598 bp Feature: domain Description: Intron_maturas2 Location: 24760-24979 bp Feature: domain Description: Intron_maturas2 Location: 24 760-24 979 bp Feature: domain Description: HNHc Note: nucleases Location: 25144-25300 bp Feature: domain Description: HNHc Note: nucleases Location: 2514 4 -25300 bp Feature: gene Location: 25485-25640 bp Feature: gene Location: 25748-27289 bp Feature: domain Description: YWFCY Location: 25757-25934 bp Feature: domain Description: YWFCY Location: 25757-25934 bp Feature: domain Description: TrwB_AAD_bind Location: 27086-27278 bp Feature: domain Description: TrwB_AAD_bind Location: 27086-27278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293), TrwB_AAD_bind (pfam10412)

Seq: WCUJ01000034.1 Bacteroides uniformis strain BIOML-A30 scaffold34_size27015, whole genome shotgun sequence (27015 bp)
Overview 1 RT 1: 717-4769 bp Neighborhood of RT #1 [717, 4846] RVT-DGRs TipAS COG2369 LPD3 Feature: gene Location: 717-959 bp Feature: gene Location: 1145-1594 bp Feature: gene Location: 1627-2928 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1840-2434 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1840-2434 bp Feature: gene Location: 3304-3537 bp Feature: gene Location: 3635-4846 bp Feature: domain Description: TipAS Location: 3659-3962 bp Feature: domain Description: TipAS Location: 365 9-3962 bp Feature: domain Description: COG2369 Location: 4082-4268 bp Feature: domain Description: COG2369 Location: 4082-4268 bp Feature: domain Description: LPD3 Location: 4487-4769 bp Feature: domain Description: LPD3 Location: 4487-4769 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798)

Seq: WCUJ01000003.1 Bacteroides uniformis strain BIOML-A30 scaffold3_size411395, whole genome shotgun sequence (411395 bp)
Overview 1 RT 1: 226365-229213 bp Neighborhood of RT #1 [226365, 229281] RVT-Retrons COG3943 Feature: gene Location: 226365-226520 bp Feature: gene Location: 226648-226863 bp Feature: gene Location: 226888-227745 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 227050-227575 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 227050-227575 bp Feature: gene Location: 227776-228651 bp Feature: gene Location: 228916-229281 bp Feature: domain Description: COG3943 Location: 228958-229213 bp Feature: domain Description: COG3943 Location: 228958-229213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein )

Seq: WCUJ01000053.1 Bacteroides uniformis strain BIOML-A30 scaffold53_size6678, whole genome shotgun sequence (6678 bp)
Overview 1 RT 1: 1-4481 bp Neighborhood of RT #1 [1, 4525] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Feature: gene Location: 1-279 bp Feature: domain Description: Bac_Flav_CT_G Location: 130-280 bp Feature: domain Description: Bac_Flav_CT_G Location: 130-280 bp Feature: gene Location: 269-2077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 533-1355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 533-1355 bp Feature: domain Description: Intron_maturas2 Location: 1424-1736 bp Feature: domain Description: Intron_maturas2 Location: 1424-17 36 bp Feature: domain Description: HNHc Note: nucleases Location: 1910-2051 bp Feature: domain Description: HNHc Note: nucleases Location: 1910-2051 bp Feature: gene Location: 2643-4193 bp Feature: domain Description: Bac_Flav_CT_G Location: 2646-4173 bp Feature: domain Description: Bac_Flav_CT_G Location: 2646-417 3 bp Feature: gene Location: 4202-4525 bp Feature: domain Description: DUF4133 Location: 4217-4481 bp Feature: domain Description: DUF4133 Location: 4217 -4481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571)

Seq: WCUJ01000005.1 Bacteroides uniformis strain BIOML-A30 scaffold5_size302269, whole genome shotgun sequence (302269 bp)
Overview 1 RT 1: 71286-73369 bp Neighborhood of RT #1 [71286, 73395] Gmd RVT-GII GDP_FS_SDR_e Feature: gene Location: 71286-71507 bp Feature: domain Description: Gmd Location: 71310-71469 bp Feature: domain Description: Gmd Location: 71310-71469 bp Feature: gene Location: 71552-71875 bp Feature: gene Location: 71897-72031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71900-72011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71900-72011 bp Feature: gene Location: 72278-72415 bp Feature: gene Location: 72622-73395 bp Feature: domain Description: GDP_FS_SDR_e Location: 72625-73369 bp Feature: domain Description: GDP_FS_SDR_e Location: 72625-73369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), RVT-GII, GDP_FS_SDR_e (cd05239)