myRT

myRT report for GCA_009020275.1_ASM902027v1

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Seq: WCUI01000010.1 Bacteroides uniformis strain BIOML-A29 scaffold10_size156661, whole genome shotgun sequence (156661 bp)
Overview 1 RT 1: 107755-110161 bp Neighborhood of RT #1 [107755, 110232] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 107755-108099 bp Feature: gene Location: 108092-108262 bp Feature: gene Location: 108377-109411 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 108587-109199 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 08587-1 091 99 bp Feature: gene Location: 109389-109760 bp Feature: gene Location: 109762-110232 bp Feature: domain Description: Phage_holin_4_1 Location: 109849-110161 bp Feature: domain Description: Phage_holin_4_1 Location: 1 09849-1 1 01 61 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WCUI01000015.1 Bacteroides uniformis strain BIOML-A29 scaffold15_size85716, whole genome shotgun sequence (85716 bp)
Overview 1 RT 1: 58572-62642 bp Neighborhood of RT #1 [58572, 62719] RVT-DGRs TipAS COG2369 LPD3 Feature: gene Location: 58572-58814 bp Feature: gene Location: 59018-59503 bp Feature: gene Location: 59500-60801 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 59713-60307 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 59713-60307 bp Feature: gene Location: 61177-61410 bp Feature: gene Location: 61508-62719 bp Feature: domain Description: TipAS Location: 61532-61835 bp Feature: domain Description: TipAS Location: 61532 -61835 bp Feature: domain Description: COG2369 Location: 61955-62141 bp Feature: domain Description: COG2 369 Location: 61955-62 141 bp Feature: domain Description: LPD3 Location: 62360-62642 bp Feature: domain Description: LPD3 Location: 62 360-62 642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798)

Seq: WCUI01000023.1 Bacteroides uniformis strain BIOML-A29 scaffold23_size61010, whole genome shotgun sequence (61010 bp)
Overview 1 RT 1: 51274-56833 bp Neighborhood of RT #1 [51274, 56904] RVT-DGRs Dam Feature: gene Location: 51274-52173 bp Feature: gene Location: 52187-53623 bp Feature: gene Location: 53982-55454 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54321-54912 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 543 21-54912 bp Feature: gene Location: 55468-55878 bp Feature: gene Location: 56062-56904 bp Feature: domain Description: Dam Location: 56065-56833 bp Feature: domain Description: Dam Location: 56065-5683 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Dam (pfam05869)

Seq: WCUI01000025.1 Bacteroides uniformis strain BIOML-A29 scaffold25_size53336, whole genome shotgun sequence (53336 bp)
Overview 1 RT 1: 2625-5455 bp Neighborhood of RT #1 [2625, 5455] RVT-DGRs Feature: gene Location: 2625-2858 bp Feature: gene Location: 3056-3211 bp Feature: gene Location: 3237-4538 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3450-4044 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 34 50-4 04 4 bp Feature: gene Location: 4538-5023 bp Feature: gene Location: 5213-5455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCUI01000002.1 Bacteroides uniformis strain BIOML-A29 scaffold2_size411373, whole genome shotgun sequence (411373 bp)
Overview 1 RT 1: 226365-229213 bp Neighborhood of RT #1 [226365, 229281] RVT-Retrons COG3943 Feature: gene Location: 226365-226520 bp Feature: gene Location: 226648-226863 bp Feature: gene Location: 226888-227745 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 227050-227575 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22705 0-2275 75 bp Feature: gene Location: 227776-228651 bp Feature: gene Location: 228916-229281 bp Feature: domain Description: COG3943 Location: 228958-229213 bp Feature: domain Description: COG3943 Location: 22895 8-229213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein )

Seq: WCUI01000032.1 Bacteroides uniformis strain BIOML-A29 scaffold32_size31748, whole genome shotgun sequence (32232 bp)
Overview 1 RT 1: 22958-28181 bp Neighborhood of RT #1 [22958, 28192] RVT-GII Intron_maturas2 HNHc YWFCY TrwB_AAD_bind Feature: gene Location: 22958-23524 bp Feature: gene Location: 23643-24269 bp Feature: gene Location: 24256-26226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24679-25501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246 79-25501 bp Feature: domain Description: Intron_maturas2 Location: 25663-25882 bp Feature: domain Description: Intron_maturas2 Location: 256 6 3-25882 bp Feature: domain Description: HNHc Note: nucleases Location: 26047-26203 bp Feature: domain Description: HNHc Note: nucleases Location: 26 047-26 203 bp Feature: gene Location: 26388-26543 bp Feature: gene Location: 26651-28192 bp Feature: domain Description: YWFCY Location: 26660-26837 bp Feature: domain Description: YWFCY Location: 26 6 6 0-26 837 bp Feature: domain Description: TrwB_AAD_bind Location: 27989-28181 bp Feature: domain Description: TrwB_AAD_bind Location: 27989-28181 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293), TrwB_AAD_bind (pfam10412)

Seq: WCUI01000075.1 Bacteroides uniformis strain BIOML-A29 scaffold84_size6393, whole genome shotgun sequence (6393 bp)
Overview 1 RT 1: 3-4910 bp Neighborhood of RT #1 [3, 4930] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 3-1016 bp Feature: domain Description: Bac_Flav_CT_G Location: 132-1017 bp Feature: domain Description: Bac_Flav_CT_G Location: 132-1017 bp Feature: gene Location: 1006-2814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1270-2092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127 0-2092 bp Feature: domain Description: Intron_maturas2 Location: 2161-2473 bp Feature: domain Description: Intron_maturas2 Location: 2161-247 3 bp Feature: domain Description: HNHc Note: nucleases Location: 2647-2788 bp Feature: domain Description: HNHc Note: nucleases Location: 2647 -27 88 bp Feature: gene Location: 2822-3322 bp Feature: gene Location: 3380-4930 bp Feature: domain Description: Bac_Flav_CT_G Location: 3383-4910 bp Feature: domain Description: Bac_Flav_CT_G Location: 3383-4910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WCUI01000009.1 Bacteroides uniformis strain BIOML-A29 scaffold9_size338170, whole genome shotgun sequence (338250 bp)
Overview 1 RT 1: 107267-109350 bp Neighborhood of RT #1 [107267, 109376] Gmd RVT-GII GDP_FS_SDR_e Feature: gene Location: 107267-107488 bp Feature: domain Description: Gmd Location: 107291-107450 bp Feature: domain Description: Gmd Location: 107291-107450 bp Feature: gene Location: 107533-107856 bp Feature: gene Location: 107878-108012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107881-107992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1078 8 1-107992 bp Feature: gene Location: 108259-108396 bp Feature: gene Location: 108603-109376 bp Feature: domain Description: GDP_FS_SDR_e Location: 108606-109350 bp Feature: domain Description: GDP_FS_SDR_e Location: 108 606-109350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), RVT-GII, GDP_FS_SDR_e (cd05239)