myRT

myRT report for GCA_009020315.1_ASM902031v1

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Seq: WCUH01000010.1 Bacteroides uniformis strain BIOML-A28 scaffold10_size156661, whole genome shotgun sequence (156661 bp)
Overview 1 RT 1: 107755-110161 bp Neighborhood of RT #1 [107755, 110232] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 107755-108099 bp Feature: gene Location: 108092-108262 bp Feature: gene Location: 108377-109411 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 108587-109199 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 08587-1 091 99 bp Feature: gene Location: 109389-109760 bp Feature: gene Location: 109762-110232 bp Feature: domain Description: Phage_holin_4_1 Location: 109849-110161 bp Feature: domain Description: Phage_holin_4_1 Location: 1 09849-1 1 01 61 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WCUH01000016.1 Bacteroides uniformis strain BIOML-A28 scaffold16_size75136, whole genome shotgun sequence (75136 bp)
Overview 1 RT 1: 47882-51384 bp Neighborhood of RT #1 [47882, 52049] RVT-DGRs Phage_Mu_F Feature: gene Location: 47882-48124 bp Feature: gene Location: 48314-48799 bp Feature: gene Location: 48799-50100 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 49012-49606 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 49012 -49606 bp Feature: gene Location: 50479-50712 bp Feature: gene Location: 50823-52049 bp Feature: domain Description: Phage_Mu_F Location: 51108-51384 bp Feature: domain Description: Phage_Mu_F Location: 51108-51384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_Mu_F (pfam04233)

Seq: WCUH01000019.1 Bacteroides uniformis strain BIOML-A28 scaffold19_size64044, whole genome shotgun sequence (64044 bp)
Overview 1 RT 1: 1326-5473 bp Neighborhood of RT #1 [1326, 5473] TipAS COG2369 LPD3 RVT-DGRs Feature: gene Location: 1326-2537 bp Feature: domain Description: TipAS Location: 1350-1653 bp Feature: domain Description: TipAS Location: 13 50-1653 bp Feature: domain Description: COG2369 Location: 1773-1959 bp Feature: domain Description: COG23 69 Location: 1773 -1959 bp Feature: domain Description: LPD3 Location: 2178-2460 bp Feature: domain Description: LPD3 Location: 2178-2460 bp Feature: gene Location: 2635-2868 bp Feature: gene Location: 3244-4545 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3457-4051 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 457-4051 bp Feature: gene Location: 4542-5027 bp Feature: gene Location: 5231-5473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), RVT-DGRs

Seq: WCUH01000020.1 Bacteroides uniformis strain BIOML-A28 scaffold20_size62597, whole genome shotgun sequence (62597 bp)
Overview 1 RT 1: 52861-58420 bp Neighborhood of RT #1 [52861, 58491] RVT-DGRs Dam Feature: gene Location: 52861-53760 bp Feature: gene Location: 53774-55210 bp Feature: gene Location: 55569-57041 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 55908-56499 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 55908-564 99 bp Feature: gene Location: 57055-57465 bp Feature: gene Location: 57649-58491 bp Feature: domain Description: Dam Location: 57652-58420 bp Feature: domain Description: Dam Location: 57652-584 20 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Dam (pfam05869)

Seq: WCUH01000028.1 Bacteroides uniformis strain BIOML-A28 scaffold28_size25816, whole genome shotgun sequence (25816 bp)
Overview 1 RT 1: 22112-25697 bp Neighborhood of RT #1 [22112, 25697] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 22112-22678 bp Feature: gene Location: 22797-23423 bp Feature: gene Location: 23410-25380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23833-24655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23833-2465 5 bp Feature: domain Description: Intron_maturas2 Location: 24817-25036 bp Feature: domain Description: Intron_maturas2 Location: 24817-25 036 bp Feature: domain Description: HNHc Note: nucleases Location: 25201-25357 bp Feature: domain Description: HNHc Note: nucleases Location: 25 201-25 35 7 bp Feature: gene Location: 25542-25697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WCUH01000002.1 Bacteroides uniformis strain BIOML-A28 scaffold2_size411395, whole genome shotgun sequence (411395 bp)
Overview 1 RT 1: 226365-229213 bp Neighborhood of RT #1 [226365, 229281] RVT-Retrons COG3943 Feature: gene Location: 226365-226520 bp Feature: gene Location: 226648-226863 bp Feature: gene Location: 226888-227745 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 227050-227575 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 227050-227575 bp Feature: gene Location: 227776-228651 bp Feature: gene Location: 228916-229281 bp Feature: domain Description: COG3943 Location: 228958-229213 bp Feature: domain Description: COG3943 Location: 228958-229213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein )

Seq: WCUH01000049.1 Bacteroides uniformis strain BIOML-A28 scaffold49_size6393, whole genome shotgun sequence (6393 bp)
Overview 1 RT 1: 3-4910 bp Neighborhood of RT #1 [3, 4930] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 3-1016 bp Feature: domain Description: Bac_Flav_CT_G Location: 132-1017 bp Feature: domain Description: Bac_Flav_CT_G Location: 132-1017 bp Feature: gene Location: 1006-2814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1270-2092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127 0-2092 bp Feature: domain Description: Intron_maturas2 Location: 2161-2473 bp Feature: domain Description: Intron_maturas2 Location: 2161-247 3 bp Feature: domain Description: HNHc Note: nucleases Location: 2647-2788 bp Feature: domain Description: HNHc Note: nucleases Location: 2647 -27 88 bp Feature: gene Location: 2822-3322 bp Feature: gene Location: 3380-4930 bp Feature: domain Description: Bac_Flav_CT_G Location: 3383-4910 bp Feature: domain Description: Bac_Flav_CT_G Location: 3383-4910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WCUH01000008.1 Bacteroides uniformis strain BIOML-A28 scaffold8_size302425, whole genome shotgun sequence (302921 bp)
Overview 1 RT 1: 71938-74021 bp Neighborhood of RT #1 [71938, 74047] Gmd RVT-GII GDP_FS_SDR_e Feature: gene Location: 71938-72159 bp Feature: domain Description: Gmd Location: 71962-72121 bp Feature: domain Description: Gmd Location: 71962-72121 bp Feature: gene Location: 72204-72527 bp Feature: gene Location: 72549-72683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72552-72663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72552-72663 bp Feature: gene Location: 72930-73067 bp Feature: gene Location: 73274-74047 bp Feature: domain Description: GDP_FS_SDR_e Location: 73277-74021 bp Feature: domain Description: GDP_FS_SDR_e Location: 73277-74021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), RVT-GII, GDP_FS_SDR_e (cd05239)