myRT

myRT report for GCA_009020325.1_ASM902032v1

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Seq: WCUG01000010.1 Bacteroides uniformis strain BIOML-A27 scaffold10_size156661, whole genome shotgun sequence (156661 bp)
Overview 1 RT 1: 107755-110161 bp Neighborhood of RT #1 [107755, 110232] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 107755-108099 bp Feature: gene Location: 108092-108262 bp Feature: gene Location: 108377-109411 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 108587-109199 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 08587-1 091 99 bp Feature: gene Location: 109389-109760 bp Feature: gene Location: 109762-110232 bp Feature: domain Description: Phage_holin_4_1 Location: 109849-110161 bp Feature: domain Description: Phage_holin_4_1 Location: 1 09849-1 1 01 61 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WCUG01000014.1 Bacteroides uniformis strain BIOML-A27 scaffold14_size84860, whole genome shotgun sequence (84860 bp)
Overview 1 RT 1: 22143-26290 bp Neighborhood of RT #1 [22143, 26290] TipAS COG2369 LPD3 RVT-DGRs Feature: gene Location: 22143-23354 bp Feature: domain Description: TipAS Location: 22167-22470 bp Feature: domain Description: TipAS Location: 2 2 167-2 2 470 bp Feature: domain Description: COG2369 Location: 22590-22776 bp Feature: domain Description: COG2 369 Location: 2 2 590-2 2 776 bp Feature: domain Description: LPD3 Location: 22995-23277 bp Feature: domain Description: LPD3 Location: 2 2 995-2 32 77 bp Feature: gene Location: 23452-23685 bp Feature: gene Location: 24061-25362 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24274-24868 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 42 74-2 4868 bp Feature: gene Location: 25359-25844 bp Feature: gene Location: 26048-26290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), RVT-DGRs

Seq: WCUG01000021.1 Bacteroides uniformis strain BIOML-A27 scaffold21_size61010, whole genome shotgun sequence (61010 bp)
Overview 1 RT 1: 51274-56833 bp Neighborhood of RT #1 [51274, 56904] RVT-DGRs Dam Feature: gene Location: 51274-52173 bp Feature: gene Location: 52187-53623 bp Feature: gene Location: 53982-55454 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54321-54912 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 543 21-54912 bp Feature: gene Location: 55468-55878 bp Feature: gene Location: 56062-56904 bp Feature: domain Description: Dam Location: 56065-56833 bp Feature: domain Description: Dam Location: 56065-5683 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Dam (pfam05869)

Seq: WCUG01000024.1 Bacteroides uniformis strain BIOML-A27 scaffold24_size53336, whole genome shotgun sequence (53336 bp)
Overview 1 RT 1: 2625-5455 bp Neighborhood of RT #1 [2625, 5455] RVT-DGRs Feature: gene Location: 2625-2858 bp Feature: gene Location: 3056-3211 bp Feature: gene Location: 3237-4538 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3450-4044 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 34 50-4 04 4 bp Feature: gene Location: 4538-5023 bp Feature: gene Location: 5213-5455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCUG01000056.1 Bacteroides uniformis strain BIOML-A27 scaffold56_size8092, whole genome shotgun sequence (8092 bp)
Overview 1 RT 1: 116-4041 bp Neighborhood of RT #1 [116, 4052] RVT-GII Intron_maturas2 HNHc YWFCY TrwB_AAD_bind Feature: gene Location: 116-2086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 539-1361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 39-1361 bp Feature: domain Description: Intron_maturas2 Location: 1523-1742 bp Feature: domain Description: Intron_maturas2 Location: 15 23-1742 bp Feature: domain Description: HNHc Note: nucleases Location: 1907-2063 bp Feature: domain Description: HNHc Note: nucleases Location: 1907-2063 bp Feature: gene Location: 2248-2403 bp Feature: gene Location: 2511-4052 bp Feature: domain Description: YWFCY Location: 2520-2697 bp Feature: domain Description: YWFCY Location: 25 20-2697 bp Feature: domain Description: TrwB_AAD_bind Location: 3849-4041 bp Feature: domain Description: TrwB_AAD_bind Location: 3849-4041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293), TrwB_AAD_bind (pfam10412)

Seq: WCUG01000072.1 Bacteroides uniformis strain BIOML-A27 scaffold72_size6393, whole genome shotgun sequence (6393 bp)
Overview 1 RT 1: 3-4910 bp Neighborhood of RT #1 [3, 4930] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 3-1016 bp Feature: domain Description: Bac_Flav_CT_G Location: 132-1017 bp Feature: domain Description: Bac_Flav_CT_G Location: 132-1017 bp Feature: gene Location: 1006-2814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1270-2092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1270-2092 bp Feature: domain Description: Intron_maturas2 Location: 2161-2473 bp Feature: domain Description: Intron_maturas2 Location: 216 1-2473 bp Feature: domain Description: HNHc Note: nucleases Location: 2647-2788 bp Feature: domain Description: HNHc Note: nucleases Location: 26 47-2788 bp Feature: gene Location: 2822-3322 bp Feature: gene Location: 3380-4930 bp Feature: domain Description: Bac_Flav_CT_G Location: 3383-4910 bp Feature: domain Description: Bac_Flav_CT_G Location: 3383-4910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WCUG01000007.1 Bacteroides uniformis strain BIOML-A27 scaffold7_size542529, whole genome shotgun sequence (542529 bp)
Overview 1 RT 1: 357499-360347 bp Neighborhood of RT #1 [357499, 360415] RVT-Retrons COG3943 Feature: gene Location: 357499-357654 bp Feature: gene Location: 357782-357997 bp Feature: gene Location: 358022-358879 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 358184-358709 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 358184-3587 09 bp Feature: gene Location: 358910-359785 bp Feature: gene Location: 360050-360415 bp Feature: domain Description: COG3943 Location: 360092-360347 bp Feature: domain Description: COG3943 Location: 360092-360347 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein )

Seq: WCUG01000008.1 Bacteroides uniformis strain BIOML-A27 scaffold8_size338273, whole genome shotgun sequence (338194 bp)
Overview 1 RT 1: 107210-109293 bp Neighborhood of RT #1 [107210, 109319] Gmd RVT-GII GDP_FS_SDR_e Feature: gene Location: 107210-107431 bp Feature: domain Description: Gmd Location: 107234-107393 bp Feature: domain Description: Gmd Location: 107234-107393 bp Feature: gene Location: 107476-107799 bp Feature: gene Location: 107821-107955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107824-107935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1078 24-107935 bp Feature: gene Location: 108202-108339 bp Feature: gene Location: 108546-109319 bp Feature: domain Description: GDP_FS_SDR_e Location: 108549-109293 bp Feature: domain Description: GDP_FS_SDR_e Location: 108 549-109293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), RVT-GII, GDP_FS_SDR_e (cd05239)