myRT

myRT report for GCA_009020355.1_ASM902035v1

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Seq: WCUE01000015.1 Bacteroides uniformis strain BIOML-A25 scaffold15_size75223, whole genome shotgun sequence (75223 bp)
Overview 1 RT 1: 24512-27342 bp Neighborhood of RT #1 [24512, 27342] RVT-DGRs Feature: gene Location: 24512-24745 bp Feature: gene Location: 24943-25098 bp Feature: gene Location: 25124-26425 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25337-25931 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25337-25931 bp Feature: gene Location: 26425-26910 bp Feature: gene Location: 27100-27342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCUE01000020.1 Bacteroides uniformis strain BIOML-A25 scaffold20_size64044, whole genome shotgun sequence (64044 bp)
Overview 1 RT 1: 1326-5473 bp Neighborhood of RT #1 [1326, 5473] TipAS COG2369 LPD3 RVT-DGRs Feature: gene Location: 1326-2537 bp Feature: domain Description: TipAS Location: 1350-1653 bp Feature: domain Description: TipAS Location: 1350-1653 bp Feature: domain Description: COG2369 Location: 1773-1959 bp Feature: domain Description: COG2 369 Location: 1773-1959 bp Feature: domain Description: LPD3 Location: 2178-2460 bp Feature: domain Description: LPD3 Location: 2 178-2 460 bp Feature: gene Location: 2635-2868 bp Feature: gene Location: 3244-4545 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3457-4051 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3457-4051 bp Feature: gene Location: 4542-5027 bp Feature: gene Location: 5231-5473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), RVT-DGRs

Seq: WCUE01000021.1 Bacteroides uniformis strain BIOML-A25 scaffold21_size62597, whole genome shotgun sequence (62597 bp)
Overview 1 RT 1: 51274-56833 bp Neighborhood of RT #1 [51274, 56904] RVT-DGRs Dam Feature: gene Location: 51274-52173 bp Feature: gene Location: 52187-53623 bp Feature: gene Location: 53982-55454 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54321-54912 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 543 21-54912 bp Feature: gene Location: 55468-55878 bp Feature: gene Location: 56062-56904 bp Feature: domain Description: Dam Location: 56065-56833 bp Feature: domain Description: Dam Location: 56065-5683 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Dam (pfam05869)

Seq: WCUE01000002.1 Bacteroides uniformis strain BIOML-A25 scaffold2_size416044, whole genome shotgun sequence (416044 bp)
Overview 1 RT 1: 185061-187144 bp Neighborhood of RT #1 [185061, 187170] Gmd RVT-GII GDP_FS_SDR_e Feature: gene Location: 185061-185282 bp Feature: domain Description: Gmd Location: 185085-185244 bp Feature: domain Description: Gmd Location: 185085-18524 4 bp Feature: gene Location: 185327-185650 bp Feature: gene Location: 185672-185806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185675-185786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185675-185786 bp Feature: gene Location: 186053-186190 bp Feature: gene Location: 186397-187170 bp Feature: domain Description: GDP_FS_SDR_e Location: 186400-187144 bp Feature: domain Description: GDP_FS_SDR_e Location: 1864 00-18714 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), RVT-GII, GDP_FS_SDR_e (cd05239)

Seq: WCUE01000003.1 Bacteroides uniformis strain BIOML-A25 scaffold3_size412744, whole genome shotgun sequence (412744 bp)
Overview 1 RT 1: 226365-229213 bp Neighborhood of RT #1 [226365, 229281] RVT-Retrons COG3943 Feature: gene Location: 226365-226520 bp Feature: gene Location: 226648-226863 bp Feature: gene Location: 226888-227745 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 227050-227575 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22705 0-2275 75 bp Feature: gene Location: 227776-228651 bp Feature: gene Location: 228916-229281 bp Feature: domain Description: COG3943 Location: 228958-229213 bp Feature: domain Description: COG3943 Location: 22895 8-229213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein )

Seq: WCUE01000049.1 Bacteroides uniformis strain BIOML-A25 scaffold49_size8092, whole genome shotgun sequence (8092 bp)
Overview 1 RT 1: 116-4041 bp Neighborhood of RT #1 [116, 4052] RVT-GII Intron_maturas2 HNHc YWFCY TrwB_AAD_bind Feature: gene Location: 116-2086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 539-1361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 539-136 1 bp Feature: domain Description: Intron_maturas2 Location: 1523-1742 bp Feature: domain Description: Intron_maturas2 Location: 1523-1742 bp Feature: domain Description: HNHc Note: nucleases Location: 1907-2063 bp Feature: domain Description: HNHc Note: nucleases Location: 1907-206 3 bp Feature: gene Location: 2248-2403 bp Feature: gene Location: 2511-4052 bp Feature: domain Description: YWFCY Location: 2520-2697 bp Feature: domain Description: YWFCY Location: 2520-26 97 bp Feature: domain Description: TrwB_AAD_bind Location: 3849-4041 bp Feature: domain Description: TrwB_AAD_bind Location: 3849-4041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293), TrwB_AAD_bind (pfam10412)

Seq: WCUE01000055.1 Bacteroides uniformis strain BIOML-A25 scaffold55_size6393, whole genome shotgun sequence (6393 bp)
Overview 1 RT 1: 3-4910 bp Neighborhood of RT #1 [3, 4930] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 3-1016 bp Feature: domain Description: Bac_Flav_CT_G Location: 132-1017 bp Feature: domain Description: Bac_Flav_CT_G Location: 132-1017 bp Feature: gene Location: 1006-2814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1270-2092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127 0-2092 bp Feature: domain Description: Intron_maturas2 Location: 2161-2473 bp Feature: domain Description: Intron_maturas2 Location: 2161-247 3 bp Feature: domain Description: HNHc Note: nucleases Location: 2647-2788 bp Feature: domain Description: HNHc Note: nucleases Location: 2647 -27 88 bp Feature: gene Location: 2822-3322 bp Feature: gene Location: 3380-4930 bp Feature: domain Description: Bac_Flav_CT_G Location: 3383-4910 bp Feature: domain Description: Bac_Flav_CT_G Location: 3383-4910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WCUE01000009.1 Bacteroides uniformis strain BIOML-A25 scaffold9_size156501, whole genome shotgun sequence (156560 bp)
Overview 1 RT 1: 107755-110161 bp Neighborhood of RT #1 [107755, 110232] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 107755-108099 bp Feature: gene Location: 108092-108262 bp Feature: gene Location: 108377-109411 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 108587-109199 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 108 58 7-109199 bp Feature: gene Location: 109389-109760 bp Feature: gene Location: 109762-110232 bp Feature: domain Description: Phage_holin_4_1 Location: 109849-110161 bp Feature: domain Description: Phage_holin_4_1 Location: 1098 49-110161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)