myRT

myRT report for GCA_009020365.1_ASM902036v1

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Seq: WCUD01000121.1 Bacteroides uniformis strain BIOML-A24 scaffold121_size7725, whole genome shotgun sequence (7725 bp)
Overview 1 RT 1: 1245-3722 bp Neighborhood of RT #1 [1245, 3722] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 1245-1715 bp Feature: domain Description: Phage_holin_4_1 Location: 1332-1644 bp Feature: domain Description: Phage_holin_4_1 Location: 1 332-1 644 bp Feature: gene Location: 1717-2088 bp Feature: gene Location: 2066-3100 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2276-2888 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2276-2888 bp Feature: gene Location: 3215-3385 bp Feature: gene Location: 3378-3722 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: WCUD01000140.1 Bacteroides uniformis strain BIOML-A24 scaffold140_size5875, whole genome shotgun sequence (5875 bp)
Overview 1 RT 1: 1727-4567 bp Neighborhood of RT #1 [1727, 4567] COG3943 RVT-Retrons Feature: gene Location: 1727-2092 bp Feature: domain Description: COG3943 Location: 1769-2024 bp Feature: domain Description: COG3943 Location: 1769-2 02 4 bp Feature: gene Location: 2357-3232 bp Feature: gene Location: 3263-4120 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3425-3950 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 342 5-3950 bp Feature: gene Location: 4145-4360 bp Feature: gene Location: 4430-4567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-Retrons

Seq: WCUD01000171.1 Bacteroides uniformis strain BIOML-A24 scaffold171_size5918, whole genome shotgun sequence (5918 bp)
Overview 1 RT 1: 1-4173 bp Neighborhood of RT #1 [1, 4193] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 1-279 bp Feature: domain Description: Bac_Flav_CT_G Location: 130-280 bp Feature: domain Description: Bac_Flav_CT_G Location: 13 0-280 bp Feature: gene Location: 269-2077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 533-1355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 3 -13 55 bp Feature: domain Description: Intron_maturas2 Location: 1424-1736 bp Feature: domain Description: Intron_maturas2 Location: 1424-173 6 bp Feature: domain Description: HNHc Note: nucleases Location: 1910-2051 bp Feature: domain Description: HNHc Note: nucleases Location: 1910-2051 bp Feature: gene Location: 2085-2585 bp Feature: gene Location: 2643-4193 bp Feature: domain Description: Bac_Flav_CT_G Location: 2646-4173 bp Feature: domain Description: Bac_Flav_CT_G Location: 2646-4173 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WCUD01000019.1 Bacteroides uniformis strain BIOML-A24 scaffold19_size85875, whole genome shotgun sequence (85875 bp)
Overview 1 RT 1: 23154-27301 bp Neighborhood of RT #1 [23154, 27301] TipAS COG2369 LPD3 RVT-DGRs Feature: gene Location: 23154-24365 bp Feature: domain Description: TipAS Location: 23178-23481 bp Feature: domain Description: TipAS Location: 23178-234 81 bp Feature: domain Description: COG2369 Location: 23601-23787 bp Feature: domain Description: COG2369 Location: 23601-23787 bp Feature: domain Description: LPD3 Location: 24006-24288 bp Feature: domain Description: LPD3 Location: 24 006-24 288 bp Feature: gene Location: 24463-24696 bp Feature: gene Location: 25072-26373 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25285-25879 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25285-25879 bp Feature: gene Location: 26370-26855 bp Feature: gene Location: 27059-27301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), RVT-DGRs

Seq: WCUD01000230.1 Bacteroides uniformis strain BIOML-A24 scaffold230_size1858, whole genome shotgun sequence (1858 bp)
Overview 1 RT 1: 1017-1835 bp Neighborhood of RT #1 [1017, 1855] Gmd RVT-GII Feature: gene Location: 1017-1238 bp Feature: domain Description: Gmd Location: 1041-1200 bp Feature: domain Description: Gmd Location: 1041-1200 bp Feature: gene Location: 1283-1606 bp Feature: gene Location: 1628-1855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1658-1835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165 8-1835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), RVT-GII

Seq: WCUD01000031.1 Bacteroides uniformis strain BIOML-A24 scaffold31_size39604, whole genome shotgun sequence (39604 bp)
Overview 1 RT 1: 4107-9737 bp Neighborhood of RT #1 [4107, 9737] Dam RVT-DGRs Feature: gene Location: 4107-4949 bp Feature: domain Description: Dam Location: 4110-4878 bp Feature: domain Description: Dam Location: 4110-4878 bp Feature: gene Location: 5133-5543 bp Feature: gene Location: 5557-7167 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6034-6625 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6 034-6 6 25 bp Feature: gene Location: 7388-8824 bp Feature: gene Location: 8838-9737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dam (pfam05869), RVT-DGRs

Seq: WCUD01000055.1 Bacteroides uniformis strain BIOML-A24 scaffold55_size28113, whole genome shotgun sequence (28113 bp)
Overview 1 RT 1: 21467-26690 bp Neighborhood of RT #1 [21467, 26701] RVT-GII Intron_maturas2 HNHc YWFCY TrwB_AAD_bind Feature: gene Location: 21467-22033 bp Feature: gene Location: 22152-22778 bp Feature: gene Location: 22765-24735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23188-24010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23188-24010 bp Feature: domain Description: Intron_maturas2 Location: 24172-24391 bp Feature: domain Description: Intron_maturas2 Location: 2417 2-24391 bp Feature: domain Description: HNHc Note: nucleases Location: 24556-24712 bp Feature: domain Description: HNHc Note: nucleases Location: 24556-247 12 bp Feature: gene Location: 24897-25052 bp Feature: gene Location: 25160-26701 bp Feature: domain Description: YWFCY Location: 25169-25346 bp Feature: domain Description: YWFCY Location: 25169-25346 bp Feature: domain Description: TrwB_AAD_bind Location: 26498-26690 bp Feature: domain Description: TrwB_AAD_bind Location: 26498-26690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293), TrwB_AAD_bind (pfam10412)

Seq: WCUD01000080.1 Bacteroides uniformis strain BIOML-A24 scaffold80_size19182, whole genome shotgun sequence (19182 bp)
Overview 1 RT 1: 13669-17171 bp Neighborhood of RT #1 [13669, 17836] RVT-DGRs Phage_Mu_F Feature: gene Location: 13669-13911 bp Feature: gene Location: 14101-14586 bp Feature: gene Location: 14586-15887 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14799-15393 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14799-15393 bp Feature: gene Location: 16266-16499 bp Feature: gene Location: 16610-17836 bp Feature: domain Description: Phage_Mu_F Location: 16895-17171 bp Feature: domain Description: Phage_Mu_F Location: 168 95-17171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_Mu_F (pfam04233)