myRT

myRT report for GCA_009024785.1_ASM902478v1

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Seq: WCLT01000157.1 Bacteroides stercoris strain BIOML-A21 scaffold157_size9336, whole genome shotgun sequence (9336 bp)
Overview 1 RT 1: 1-4178 bp Neighborhood of RT #1 [1, 4178] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 1-456 bp Feature: gene Location: 739-1668 bp Feature: domain Description: Toprim_2 Location: 1291-1579 bp Feature: domain Description: Toprim_2 Location: 1 291 -1 579 bp Feature: gene Location: 1640-3448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1904-2726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 904-2726 bp Feature: domain Description: Intron_maturas2 Location: 2795-3104 bp Feature: domain Description: Intron_maturas2 Location: 2795-31 04 bp Feature: gene Location: 3737-3880 bp Feature: gene Location: 3996-4178 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCLT01000186.1 Bacteroides stercoris strain BIOML-A21 scaffold186_size7474, whole genome shotgun sequence (7474 bp)
Overview 1 RT 1: 3-7471 bp Neighborhood of RT #1 [3, 7471] RVT-GII Intron_maturas2 HNHc DUF4134 DUF4133 Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 3-833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 -105 bp Feature: domain Description: Intron_maturas2 Location: 297-507 bp Feature: domain Description: Intron_maturas2 Location: 2 97-507 bp Feature: domain Description: HNHc Note: nucleases Location: 657-762 bp Feature: domain Description: HNHc Note: nucleases Location: 657-762 bp Feature: gene Location: 858-1052 bp Feature: domain Description: DUF4134 Location: 948-1038 bp Feature: domain Description: DUF4134 Location: 948-1038 bp Feature: gene Location: 1101-1400 bp Feature: domain Description: DUF4133 Location: 1143-1323 bp Feature: domain Description: DUF4133 Location: 1143-132 3 bp Feature: gene Location: 1523-3736 bp Feature: domain Description: Bac_Flav_CT_G Location: 1673-3182 bp Feature: domain Description: Bac_Flav_CT_G Location: 1673-3182 bp Feature: domain Description: Bac_Flav_CT_G Location: 3254-3722 bp Feature: domain Description: Bac_Flav_CT_G Location: 32 54-372 2 bp Feature: gene Location: 4283-6094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4547-5369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4547-5369 bp Feature: domain Description: Intron_maturas2 Location: 5444-5759 bp Feature: domain Description: Intron_maturas2 Location: 5444-5759 bp Feature: domain Description: HNHc Note: nucleases Location: 5915-6065 bp Feature: domain Description: HNHc Note: nucleases Location: 5915-6065 bp Feature: gene Location: 6151-6717 bp Feature: domain Description: Bac_Flav_CT_G Location: 6184-6604 bp Feature: domain Description: Bac_Flav_CT_G Location: 6184-6604 bp Feature: gene Location: 6938-7471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4134 (pfam13572), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783)

Seq: WCLT01000020.1 Bacteroides stercoris strain BIOML-A21 scaffold20_size30236, whole genome shotgun sequence (30236 bp)
Overview 1 RT 1: 20777-28438 bp Neighborhood of RT #1 [20777, 30234] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 20777-21922 bp Feature: domain Description: Arm-DNA-bind_5 Location: 20801-21047 bp Feature: domain Description: Arm-DNA-bind_5 Location: 20801-21047 bp Feature: domain Description: Phage_int_SAM_5 Location: 21086-21371 bp Feature: domain Description: Phage_int_SAM_5 Location: 21086-213 71 bp Feature: domain Description: INTN1_C_like Location: 21410-21884 bp Feature: domain Description: INTN1_C_like Location: 21410-21884 bp Feature: gene Location: 21972-22466 bp Feature: gene Location: 22468-23823 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22744-23335 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22744-23 3 3 5 bp Feature: gene Location: 23968-24135 bp Feature: gene Location: 24196-30234 bp Feature: domain Description: Laminin_G_3 Location: 25882-26263 bp Feature: domain Description: Laminin_G_3 Location: 25882-26263 bp Feature: domain Description: pfam08757 Location: 27058-27382 bp Feature: domain Description: pfam08757 Location: 27058-273 82 bp Feature: domain Description: LRR_AMN1 Location: 27994-28438 bp Feature: domain Description: LRR_AMN1 Location: 27994-2843 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034)

Seq: WCLT01000239.1 Bacteroides stercoris strain BIOML-A21 scaffold239_size7000, whole genome shotgun sequence (7000 bp)
Overview 1 RT 1: 5065-6723 bp Neighborhood of RT #1 [5065, 6908] RVT-GII GIIM Feature: gene Location: 5065-5256 bp Feature: gene Location: 5272-5466 bp Feature: gene Location: 5511-6488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5847-6465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584 7-64 65 bp Feature: gene Location: 6564-6908 bp Feature: domain Description: GIIM Note: maturase Location: 6573-6723 bp Feature: domain Description: GIIM Note: maturase Location: 6573-6723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WCLT01000286.1 Bacteroides stercoris strain BIOML-A21 scaffold286_size3811, whole genome shotgun sequence (3811 bp)
Overview 1 RT 1: 512-3808 bp Neighborhood of RT #1 [512, 3808] RVT-UG27 RVT-UG27 Feature: gene Location: 512-976 bp Feature: gene Location: 1049-1249 bp Feature: gene Location: 1338-2021 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1341-1587 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1341-15 87 bp Feature: gene Location: 2099-2596 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 2291-2483 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 2291-2483 bp Feature: gene Location: 2589-3239 bp Feature: gene Location: 3275-3808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WCLT01000044.1 Bacteroides stercoris strain BIOML-A21 scaffold44_size19713, whole genome shotgun sequence (19713 bp)
Overview 1 RT 1: 17507-19708 bp Neighborhood of RT #1 [17507, 19710] DUF4134 DUF4134 RVT-GII Feature: gene Location: 17507-17836 bp Feature: domain Description: DUF4134 Location: 17534-17822 bp Feature: domain Description: DUF4134 Location: 17534-17822 bp Feature: gene Location: 17895-18173 bp Feature: domain Description: DUF4134 Location: 17958-18153 bp Feature: domain Description: DUF4134 Location: 17958-18153 bp Feature: gene Location: 18715-19710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18979-19708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18979-19708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII

Seq: WCLT01000069.1 Bacteroides stercoris strain BIOML-A21 scaffold69_size15968, whole genome shotgun sequence (15968 bp)
Overview 1 RT 1: 11244-15967 bp Neighborhood of RT #1 [11244, 15967] RVT-DGRs Feature: gene Location: 11244-11552 bp Feature: gene Location: 11806-12294 bp Feature: gene Location: 12296-13597 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12509-13106 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12509-13106 bp Feature: gene Location: 13793-15967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCLT01000006.1 Bacteroides stercoris strain BIOML-A21 scaffold6_size47014, whole genome shotgun sequence (47014 bp)
Overview 1 RT 1: 32794-35961 bp Neighborhood of RT #1 [32794, 35993] RVT-DGRs RVT-DGRs HTH_XRE Gp49 Feature: gene Location: 32794-33039 bp Feature: gene Location: 33023-33529 bp Feature: gene Location: 33597-34289 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33606-33789 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33606-3378 9 bp Feature: gene Location: 34352-35086 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 34745-35042 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 34745-35042 bp Feature: gene Location: 35333-35644 bp Feature: domain Description: HTH_XRE Location: 35447-35600 bp Feature: domain Description: HTH_XRE Location: 35447-35600 bp Feature: gene Location: 35649-35993 bp Feature: domain Description: Gp49 Location: 35703-35961 bp Feature: domain Description: Gp49 Location: 35703-35961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, HTH_XRE (smart00530), Gp49 (pfam05973)