myRT

myRT report for GCA_009024805.1_ASM902480v1

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Seq: WCLS01000103.1 Bacteroides stercoris strain BIOML-A20 scaffold103_size4820, whole genome shotgun sequence (4820 bp)
Overview 1 RT 1: 2-1797 bp Neighborhood of RT #1 [2, 1797] RVT-UG27 Feature: gene Location: 2-475 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 194-476 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1 94-476 bp Feature: gene Location: 468-1136 bp Feature: gene Location: 1150-1797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WCLS01000010.1 Bacteroides stercoris strain BIOML-A20 scaffold10_size93411, whole genome shotgun sequence (93411 bp)
Overview 1 RT 1: 73697-76659 bp Neighborhood of RT #1 [73697, 76659] RVT-DGRs Feature: gene Location: 73697-73930 bp Feature: gene Location: 73952-74209 bp Feature: gene Location: 74306-75607 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 74519-75116 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 74519-75116 bp Feature: gene Location: 75609-76097 bp Feature: gene Location: 76351-76659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCLS01000121.1 Bacteroides stercoris strain BIOML-A20 scaffold121_size1863, whole genome shotgun sequence (1863 bp)
Overview 1 RT 1: 2-1860 bp Neighborhood of RT #1 [2, 1860] RVT-GII Feature: gene Location: 2-319 bp Feature: gene Location: 476-1453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 812-1430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 812-143 0 bp Feature: gene Location: 1498-1692 bp Feature: gene Location: 1708-1860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WCLS01000019.1 Bacteroides stercoris strain BIOML-A20 scaffold19_size71965, whole genome shotgun sequence (71965 bp)
Overview 1 RT 1: 18474-29458 bp Neighborhood of RT #1 [18474, 30138] DUF4134 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4133 Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G SMC_prok_B Feature: gene Location: 18474-18803 bp Feature: domain Description: DUF4134 Location: 18501-18789 bp Feature: domain Description: DUF4 134 Location: 18501-18789 bp Feature: gene Location: 18862-19140 bp Feature: domain Description: DUF4134 Location: 18925-19120 bp Feature: domain Description: DUF4 134 Location: 18925-19120 bp Feature: gene Location: 19682-21493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19946-20768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1994 6-20768 bp Feature: domain Description: Intron_maturas2 Location: 20957-21167 bp Feature: domain Description: Intron_maturas2 Location: 20957-21167 bp Feature: domain Description: HNHc Note: nucleases Location: 21317-21422 bp Feature: domain Description: HNHc Note: nucleases Location: 21317-214 22 bp Feature: gene Location: 21518-21712 bp Feature: domain Description: DUF4134 Location: 21608-21698 bp Feature: domain Description: DUF4 134 Location: 21608-21698 bp Feature: gene Location: 21761-22060 bp Feature: domain Description: DUF4133 Location: 21803-21983 bp Feature: domain Description: DUF4 133 Location: 21803-21983 bp Feature: gene Location: 22183-24396 bp Feature: domain Description: Bac_Flav_CT_G Location: 22333-23842 bp Feature: domain Description: Bac_Flav_CT_G Location: 22333-2384 2 bp Feature: domain Description: Bac_Flav_CT_G Location: 23914-24382 bp Feature: domain Description: Bac_Flav_CT_G Location: 23914 -24 382 bp Feature: gene Location: 24424-24597 bp Feature: gene Location: 24943-26754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25207-26029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25207-26029 bp Feature: domain Description: Intron_maturas2 Location: 26104-26419 bp Feature: domain Description: Intron_maturas2 Location: 26104 -264 19 bp Feature: domain Description: HNHc Note: nucleases Location: 26575-26725 bp Feature: domain Description: HNHc Note: nucleases Location: 26575-26725 bp Feature: gene Location: 26811-27377 bp Feature: domain Description: Bac_Flav_CT_G Location: 26844-27264 bp Feature: domain Description: Bac_Flav_CT_G Location: 2684 4 -27264 bp Feature: gene Location: 27598-30138 bp Feature: domain Description: SMC_prok_B Location: 29146-29458 bp Feature: domain Description: SMC_prok_B Location: 2914 6-294 58 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), SMC_prok_B (TIGR02168)

Seq: WCLS01000024.1 Bacteroides stercoris strain BIOML-A20 scaffold24_size69710, whole genome shotgun sequence (69450 bp)
Overview 1 RT 1: 50309-55434 bp Neighborhood of RT #1 [50309, 55434] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 50309-51712 bp Feature: gene Location: 51995-52924 bp Feature: domain Description: Toprim_2 Location: 52547-52835 bp Feature: domain Description: Toprim_2 Location: 5 25 47-5 2835 bp Feature: gene Location: 52896-54704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53160-53982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 3160-5 3982 bp Feature: domain Description: Intron_maturas2 Location: 54051-54360 bp Feature: domain Description: Intron_maturas2 Location: 5 405 1-5 4360 bp Feature: gene Location: 54993-55136 bp Feature: gene Location: 55252-55434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCLS01000002.1 Bacteroides stercoris strain BIOML-A20 scaffold2_size152707, whole genome shotgun sequence (152707 bp)
Overview 1 RT 1: 82703-92869 bp Neighborhood of RT #1 [82703, 92907] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 82703-89491 bp Feature: domain Description: Laminin_G_3 Location: 85139-85520 bp Feature: domain Description: Laminin_G_3 Location: 85139-85520 bp Feature: domain Description: pfam08757 Location: 86315-86639 bp Feature: domain Description: pfam08757 Location: 86 315-86 6 39 bp Feature: domain Description: LRR_AMN1 Location: 87251-87695 bp Feature: domain Description: LRR_AMN1 Location: 87251-876 95 bp Feature: gene Location: 89551-89718 bp Feature: gene Location: 89922-91217 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 90138-90729 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 90138-90729 bp Feature: gene Location: 91219-91713 bp Feature: gene Location: 91762-92907 bp Feature: domain Description: Arm-DNA-bind_5 Location: 91786-92032 bp Feature: domain Description: Arm-DNA-bind_5 Location: 91786 -92032 bp Feature: domain Description: Phage_int_SAM_5 Location: 92071-92356 bp Feature: domain Description: Phage_int_SAM_5 Location: 92071-92356 bp Feature: domain Description: INTN1_C_like Location: 92395-92869 bp Feature: domain Description: INTN1_C_like Location: 92395-9286 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: WCLS01000009.1 Bacteroides stercoris strain BIOML-A20 scaffold9_size101108, whole genome shotgun sequence (101245 bp)
Overview 1 RT 1: 30163-33677 bp Neighborhood of RT #1 [30163, 33709] ZapB RVT-DGRs RVT-DGRs HTH_XRE Gp49 Feature: gene Location: 30163-30522 bp Feature: domain Description: ZapB Location: 30355-30466 bp Feature: domain Description: ZapB Location: 30355-30466 bp Feature: gene Location: 30739-31245 bp Feature: gene Location: 31313-32005 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31322-31505 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31322-31505 bp Feature: gene Location: 32068-32802 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32461-32758 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32461-327 58 bp Feature: gene Location: 33049-33360 bp Feature: domain Description: HTH_XRE Location: 33163-33316 bp Feature: domain Description: HTH_XRE Location: 33163-33316 bp Feature: gene Location: 33365-33709 bp Feature: domain Description: Gp49 Location: 33419-33677 bp Feature: domain Description: Gp49 Location: 33419-3367 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ZapB (pfam06005), RVT-DGRs, HTH_XRE (smart00530), Gp49 (pfam05973)