myRT

myRT report for GCA_009024975.1_ASM902497v1

Download annotations/find similar RTs

Seq: WCLL01000015.1 Bacteroides stercoris strain BIOML-A13 scaffold15_size88980, whole genome shotgun sequence (89270 bp)
Overview 1 RT 1: 22163-25997 bp Neighborhood of RT #1 [22163, 25997] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 22163-22633 bp Feature: domain Description: Phage_holin_4_1 Location: 22250-22562 bp Feature: domain Description: Phage_holin_4_1 Location: 22250-22562 bp Feature: gene Location: 22635-23006 bp Feature: gene Location: 22984-24018 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 23194-23806 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 231 94-23806 bp Feature: gene Location: 24275-24619 bp Feature: gene Location: 24663-25997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: WCLL01000022.1 Bacteroides stercoris strain BIOML-A13 scaffold22_size62115, whole genome shotgun sequence (62115 bp)
Overview 1 RT 1: 46082-51290 bp Neighborhood of RT #1 [46082, 51307] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 46082-46396 bp Feature: domain Description: DUF3876 Location: 46136-46385 bp Feature: domain Description: DUF3876 Location: 46136-46385 bp Feature: gene Location: 46411-48798 bp Feature: domain Description: Bac_Flav_CT_G Location: 46531-48790 bp Feature: domain Description: Bac_Flav_CT_G Location: 46531-48790 bp Feature: gene Location: 48779-50506 bp Feature: domain Description: RVT_N Location: 48884-49127 bp Feature: domain Description: RVT_N Location: 48884-4912 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49172-49820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49172 -4982 0 bp Feature: domain Description: GIIM Note: maturase Location: 49871-50105 bp Feature: domain Description: GIIM Note: maturase Location: 49871-50105 bp Feature: gene Location: 50838-50993 bp Feature: gene Location: 51062-51307 bp Feature: domain Description: Bac_Flav_CT_G Location: 51065-51290 bp Feature: domain Description: Bac_Flav_CT_G Location: 51065-512 90 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCLL01000057.1 Bacteroides stercoris strain BIOML-A13 scaffold57_size13753, whole genome shotgun sequence (13753 bp)
Overview 1 RT 1: 3652-10312 bp Neighborhood of RT #1 [3652, 10380] DNA_pol_A DNA_pol_A RVT-UG9 ComA-like_MBL-fold ComA-like_MBL-fold Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 3652-3846 bp Feature: gene Location: 3876-5315 bp Feature: domain Description: DNA_pol_A Location: 4536-4929 bp Feature: domain Description: DNA_pol_A Location: 453 6-4929 bp Feature: domain Description: DNA_pol_A Location: 5064-5211 bp Feature: domain Description: DNA_pol_A Location: 5064-5211 bp Feature: gene Location: 5312-7693 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 6230-6845 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 623 0-6845 bp Feature: gene Location: 7668-8660 bp Feature: domain Description: ComA-like_MBL-fold Location: 7719-7983 bp Feature: domain Description: ComA-like_MBL-fold Location: 7719-7983 bp Feature: domain Description: ComA-like_MBL-fold Location: 8232-8400 bp Feature: domain Description: ComA-like_MBL-fold Location: 823 2-8400 bp Feature: gene Location: 9157-10380 bp Feature: domain Description: Arm-DNA-bind_5 Location: 9202-9442 bp Feature: domain Description: Arm-DNA-bind_5 Location: 9202-9442 bp Feature: domain Description: Phage_int_SAM_5 Location: 9484-9793 bp Feature: domain Description: Phage_int_SAM_5 Location: 9484-9793 bp Feature: domain Description: INTN1_C_like Location: 9838-10312 bp Feature: domain Description: INTN1_C_like Location: 983 8-103 12 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA_pol_A (pfam00476), RVT-UG9, ComA-like_MBL-fold (cd07731), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: WCLL01000006.1 Bacteroides stercoris strain BIOML-A13 scaffold6_size152081, whole genome shotgun sequence (152081 bp)
Overview 1 RT 1: 56716-62706 bp Neighborhood of RT #1 [56716, 62706] RVT-DGRs Feature: gene Location: 56716-57084 bp Feature: gene Location: 57112-57372 bp Feature: gene Location: 57391-58458 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 57601-58249 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 57601-5824 9 bp Feature: gene Location: 58442-58855 bp Feature: gene Location: 59044-62706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCLL01000083.1 Bacteroides stercoris strain BIOML-A13 scaffold83_size2484, whole genome shotgun sequence (2484 bp)
Overview 1 RT 1: 190-2035 bp Neighborhood of RT #1 [190, 2367] matK RVT-GII Intron_maturas2 Feature: gene Location: 190-459 bp Feature: gene Location: 565-2367 bp Feature: domain Description: matK Location: 634-721 bp Feature: domain Description: matK Location: 634-721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-1651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-165 1 bp Feature: domain Description: Intron_maturas2 Location: 1801-2035 bp Feature: domain Description: Intron_maturas2 Location: 1801-2035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348)