myRT

myRT report for GCA_009025105.1_ASM902510v1

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Seq: WCLD01000102.1 Bacteroides stercoris strain BIOML-A5 scaffold102_size2468, whole genome shotgun sequence (2468 bp)
Overview 1 RT 1: 136-2334 bp Neighborhood of RT #1 [136, 2468] nirV RVT-DGRs Feature: gene Location: 136-855 bp Feature: domain Description: nirV Location: 148-385 bp Feature: domain Description: nirV Location: 1 48-385 bp Feature: gene Location: 1102-1254 bp Feature: gene Location: 1269-2468 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1710-2334 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 71 0-2334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nirV (LOAD_nirV), RVT-DGRs

Seq: WCLD01000014.1 Bacteroides stercoris strain BIOML-A5 scaffold14_size88907, whole genome shotgun sequence (89093 bp)
Overview 1 RT 1: 21986-25820 bp Neighborhood of RT #1 [21986, 25820] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 21986-22456 bp Feature: domain Description: Phage_holin_4_1 Location: 22073-22385 bp Feature: domain Description: Phage_holin_4_1 Location: 2 2 073-2 2 385 bp Feature: gene Location: 22458-22829 bp Feature: gene Location: 22807-23841 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 23017-23629 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 3017-2 362 9 bp Feature: gene Location: 24098-24442 bp Feature: gene Location: 24486-25820 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: WCLD01000023.1 Bacteroides stercoris strain BIOML-A5 scaffold23_size62115, whole genome shotgun sequence (62115 bp)
Overview 1 RT 1: 46082-51290 bp Neighborhood of RT #1 [46082, 51307] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 46082-46396 bp Feature: domain Description: DUF3876 Location: 46136-46385 bp Feature: domain Description: DUF3 876 Location: 4613 6-463 85 bp Feature: gene Location: 46411-48798 bp Feature: domain Description: Bac_Flav_CT_G Location: 46531-48790 bp Feature: domain Description: Bac_Flav_CT_G Location: 4653 1-48790 bp Feature: gene Location: 48779-50506 bp Feature: domain Description: RVT_N Location: 48884-49127 bp Feature: domain Description: RVT_N Location: 48884-49127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49172-49820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49172-49820 bp Feature: domain Description: GIIM Note: maturase Location: 49871-50105 bp Feature: domain Description: GIIM Note: maturase Location: 49871-50105 bp Feature: gene Location: 50838-50993 bp Feature: gene Location: 51062-51307 bp Feature: domain Description: Bac_Flav_CT_G Location: 51065-51290 bp Feature: domain Description: Bac_Flav_CT_G Location: 51065-51290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCLD01000005.1 Bacteroides stercoris strain BIOML-A5 scaffold5_size152082, whole genome shotgun sequence (152082 bp)
Overview 1 RT 1: 89376-95366 bp Neighborhood of RT #1 [89376, 95366] RVT-DGRs Feature: gene Location: 89376-93038 bp Feature: gene Location: 93227-93640 bp Feature: gene Location: 93624-94691 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 93834-94482 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 93834 -94 4 82 bp Feature: gene Location: 94710-94970 bp Feature: gene Location: 94998-95366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCLD01000061.1 Bacteroides stercoris strain BIOML-A5 scaffold61_size13753, whole genome shotgun sequence (13753 bp)
Overview 1 RT 1: 3652-10312 bp Neighborhood of RT #1 [3652, 10380] DNA_pol_A DNA_pol_A RVT-UG9 ComA-like_MBL-fold ComA-like_MBL-fold Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 3652-3846 bp Feature: gene Location: 3876-5315 bp Feature: domain Description: DNA_pol_A Location: 4536-4929 bp Feature: domain Description: DNA_pol_A Location: 45 36-4929 bp Feature: domain Description: DNA_pol_A Location: 5064-5211 bp Feature: domain Description: DNA_pol_A Location: 5 064-5 211 bp Feature: gene Location: 5312-7693 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 6230-6845 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 6230-6845 bp Feature: gene Location: 7668-8660 bp Feature: domain Description: ComA-like_MBL-fold Location: 7719-7983 bp Feature: domain Description: ComA-like_MBL-fold Location: 7719-7983 bp Feature: domain Description: ComA-like_MBL-fold Location: 8232-8400 bp Feature: domain Description: ComA-like_MBL-fold Location: 8232-8400 bp Feature: gene Location: 9157-10380 bp Feature: domain Description: Arm-DNA-bind_5 Location: 9202-9442 bp Feature: domain Description: Arm-DNA-bind_5 Location: 9202-9442 bp Feature: domain Description: Phage_int_SAM_5 Location: 9484-9793 bp Feature: domain Description: Phage_int_SAM_5 Location: 9484-9793 bp Feature: domain Description: INTN1_C_like Location: 9838-10312 bp Feature: domain Description: INTN1_C_like Location: 9838-10312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA_pol_A (pfam00476), RVT-UG9, ComA-like_MBL-fold (cd07731), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: WCLD01000099.1 Bacteroides stercoris strain BIOML-A5 scaffold99_size2484, whole genome shotgun sequence (2484 bp)
Overview 1 RT 1: 190-2035 bp Neighborhood of RT #1 [190, 2367] matK RVT-GII Intron_maturas2 Feature: gene Location: 190-459 bp Feature: gene Location: 565-2367 bp Feature: domain Description: matK Location: 634-721 bp Feature: domain Description: matK Location: 6 34-721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-1651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-16 51 bp Feature: domain Description: Intron_maturas2 Location: 1801-2035 bp Feature: domain Description: Intron_maturas2 Location: 1801-2035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348)