myRT

myRT report for GCA_009025135.1_ASM902513v1

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Seq: WCLB01000014.1 Bacteroides stercoris strain BIOML-A3 scaffold14_size87355, whole genome shotgun sequence (87355 bp)
Overview 1 RT 1: 19051-22901 bp Neighborhood of RT #1 [19051, 22901] Endonuc-EcoRV dam RVT-DGRs Avd_like Feature: gene Location: 19051-19854 bp Feature: domain Description: Endonuc-EcoRV Location: 19114-19813 bp Feature: domain Description: Endonuc-EcoRV Location: 1 91 1 4-1 981 3 bp Feature: gene Location: 19854-20774 bp Feature: domain Description: dam Location: 19863-20697 bp Feature: domain Description: dam Location: 1 9863-20697 bp Feature: gene Location: 20819-22033 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21014-21743 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21 01 4-21 743 bp Feature: gene Location: 22008-22367 bp Feature: domain Description: Avd_like Location: 22035-22341 bp Feature: domain Description: Avd_like Location: 22035-22341 bp Feature: gene Location: 22389-22901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Endonuc-EcoRV (pfam09233), dam (TIGR00571), RVT-DGRs, Avd_like (cd16376)

Seq: WCLB01000015.1 Bacteroides stercoris strain BIOML-A3 scaffold15_size84379, whole genome shotgun sequence (84503 bp)
Overview 1 RT 1: 78944-84013 bp Neighborhood of RT #1 [78944, 84013] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like INTN1_C_like RVT-GII Intron_maturas2 DDE_Tnp_1_6 Feature: gene Location: 78944-79912 bp Feature: domain Description: Arm-DNA-bind_5 Location: 78980-79241 bp Feature: domain Description: Arm-DNA-bind_5 Location: 78980-792 41 bp Feature: domain Description: Phage_int_SAM_5 Location: 79310-79580 bp Feature: domain Description: Phage_int_SAM_5 Location: 79310-79580 bp Feature: domain Description: INTN1_C_like Location: 79634-79880 bp Feature: domain Description: INTN1_C_like Location: 79634-79880 bp Feature: gene Location: 79884-80129 bp Feature: domain Description: INTN1_C_like Location: 79908-80109 bp Feature: domain Description: INTN1_C_like Location: 79908-80109 bp Feature: gene Location: 80680-82488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80944-81766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80944-81766 bp Feature: domain Description: Intron_maturas2 Location: 81892-82147 bp Feature: domain Description: Intron_maturas2 Location: 81892 -82 147 bp Feature: gene Location: 82804-83661 bp Feature: domain Description: DDE_Tnp_1_6 Location: 83158-83533 bp Feature: domain Description: DDE_Tnp_1_6 Location: 83158-83533 bp Feature: gene Location: 83756-84013 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), DDE_Tnp_1_6 (pfam13751)

Seq: WCLB01000017.1 Bacteroides stercoris strain BIOML-A3 scaffold17_size87840, whole genome shotgun sequence (87840 bp)
Overview 1 RT 1: 83025-87654 bp Neighborhood of RT #1 [83025, 87743] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 83025-84092 bp Feature: domain Description: AAA_25 Location: 83160-83622 bp Feature: domain Description: AAA_25 Location: 83 160-83 622 bp Feature: gene Location: 84304-84486 bp Feature: gene Location: 85034-86842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85298-86120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85298-86120 bp Feature: domain Description: Intron_maturas2 Location: 86189-86498 bp Feature: domain Description: Intron_maturas2 Location: 86189-86498 bp Feature: gene Location: 86814-87743 bp Feature: domain Description: Toprim_2 Location: 87366-87654 bp Feature: domain Description: Toprim_2 Location: 873 66-87654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: WCLB01000064.1 Bacteroides stercoris strain BIOML-A3 scaffold64_size8911, whole genome shotgun sequence (8911 bp)
Overview 1 RT 1: 3470-7517 bp Neighborhood of RT #1 [3470, 7522] Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Feature: gene Location: 3470-3895 bp Feature: domain Description: Bac_Flav_CT_N Location: 3473-3875 bp Feature: domain Description: Bac_Flav_CT_N Location: 34 73-3875 bp Feature: gene Location: 4066-4401 bp Feature: gene Location: 4436-6247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4700-5522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 700-5522 bp Feature: domain Description: Intron_maturas2 Location: 5591-5900 bp Feature: domain Description: Intron_maturas2 Location: 5591-5900 bp Feature: gene Location: 6219-6944 bp Feature: domain Description: Bac_Flav_CT_N Location: 6363-6924 bp Feature: domain Description: Bac_Flav_CT_N Location: 6363-6924 bp Feature: gene Location: 6947-7522 bp Feature: domain Description: TraO Location: 7022-7517 bp Feature: domain Description: TraO Location: 7022-7517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), TraO (pfam10626)

Seq: WCLB01000006.1 Bacteroides stercoris strain BIOML-A3 scaffold6_size137414, whole genome shotgun sequence (137414 bp)
Overview 1 RT 1: 126272-129092 bp Neighborhood of RT #1 [126272, 129092] RVT-DGRs Feature: gene Location: 126272-126505 bp Feature: gene Location: 126527-126784 bp Feature: gene Location: 126881-128182 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 127094-127688 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 127094-127688 bp Feature: gene Location: 128215-128664 bp Feature: gene Location: 128850-129092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs