myRT

myRT report for GCA_009025175.1_ASM902517v1

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Seq: WCLA01000013.1 Bacteroides stercoris strain BIOML-A2 scaffold13_size87010, whole genome shotgun sequence (87010 bp)
Overview 1 RT 1: 19091-22941 bp Neighborhood of RT #1 [19091, 22941] Endonuc-EcoRV dam RVT-DGRs Avd_like Feature: gene Location: 19091-19894 bp Feature: domain Description: Endonuc-EcoRV Location: 19154-19853 bp Feature: domain Description: Endonuc-EcoRV Location: 1 91 54-1 9853 bp Feature: gene Location: 19894-20814 bp Feature: domain Description: dam Location: 19903-20737 bp Feature: domain Description: dam Location: 1 9903-20737 bp Feature: gene Location: 20859-22073 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21054-21783 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21 054-21 783 bp Feature: gene Location: 22048-22407 bp Feature: domain Description: Avd_like Location: 22075-22381 bp Feature: domain Description: Avd_like Location: 22075-22381 bp Feature: gene Location: 22429-22941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Endonuc-EcoRV (pfam09233), dam (TIGR00571), RVT-DGRs, Avd_like (cd16376)

Seq: WCLA01000014.1 Bacteroides stercoris strain BIOML-A2 scaffold14_size84482, whole genome shotgun sequence (84854 bp)
Overview 1 RT 1: 78942-84669 bp Neighborhood of RT #1 [78942, 84851] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like INTN1_C_like RVT-GII Intron_maturas2 DDE_Tnp_1_6 COG3666 COG3666 Feature: gene Location: 78942-79910 bp Feature: domain Description: Arm-DNA-bind_5 Location: 78978-79239 bp Feature: domain Description: Arm-DNA-bind_5 Location: 78978-792 39 bp Feature: domain Description: Phage_int_SAM_5 Location: 79308-79578 bp Feature: domain Description: Phage_int_SAM_5 Location: 79308-79578 bp Feature: domain Description: INTN1_C_like Location: 79632-79878 bp Feature: domain Description: INTN1_C_like Location: 79632 -79878 bp Feature: gene Location: 79882-80127 bp Feature: domain Description: INTN1_C_like Location: 79906-80107 bp Feature: domain Description: INTN1_C_like Location: 79906-80107 bp Feature: gene Location: 80678-82486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80942-81764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80942 -81764 bp Feature: domain Description: Intron_maturas2 Location: 81890-82145 bp Feature: domain Description: Intron_maturas2 Location: 81890-82 145 bp Feature: gene Location: 82802-83923 bp Feature: domain Description: DDE_Tnp_1_6 Location: 83420-83795 bp Feature: domain Description: DDE_Tnp_1_6 Location: 8342 0-83795 bp Feature: gene Location: 84018-84851 bp Feature: domain Description: COG3666 Location: 84024-84405 bp Feature: domain Description: COG3666 Location: 8402 4-84405 bp Feature: domain Description: COG3666 Location: 84528-84669 bp Feature: domain Description: COG3666 Location: 8452 8-84669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), DDE_Tnp_1_6 (pfam13751), COG3666 (Transposase )

Seq: WCLA01000016.1 Bacteroides stercoris strain BIOML-A2 scaffold16_size87840, whole genome shotgun sequence (87840 bp)
Overview 1 RT 1: 83025-87654 bp Neighborhood of RT #1 [83025, 87743] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 83025-84092 bp Feature: domain Description: AAA_25 Location: 83160-83622 bp Feature: domain Description: AAA_25 Location: 83 160-83 622 bp Feature: gene Location: 84304-84486 bp Feature: gene Location: 85034-86842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85298-86120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85298-86120 bp Feature: domain Description: Intron_maturas2 Location: 86189-86498 bp Feature: domain Description: Intron_maturas2 Location: 86189-86498 bp Feature: gene Location: 86814-87743 bp Feature: domain Description: Toprim_2 Location: 87366-87654 bp Feature: domain Description: Toprim_2 Location: 873 66-87654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: WCLA01000001.1 Bacteroides stercoris strain BIOML-A2 scaffold1_size279584, whole genome shotgun sequence (279655 bp)
Overview 1 RT 1: 30592-33412 bp Neighborhood of RT #1 [30592, 33412] RVT-DGRs Feature: gene Location: 30592-30834 bp Feature: gene Location: 31020-31469 bp Feature: gene Location: 31502-32803 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31715-32309 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31715-32309 bp Feature: gene Location: 32900-33157 bp Feature: gene Location: 33179-33412 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCLA01000004.1 Bacteroides stercoris strain BIOML-A2 scaffold4_size206951, whole genome shotgun sequence (206951 bp)
Overview 1 RT 1: 3470-7517 bp Neighborhood of RT #1 [3470, 7522] Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Feature: gene Location: 3470-3895 bp Feature: domain Description: Bac_Flav_CT_N Location: 3473-3875 bp Feature: domain Description: Bac_Flav_CT_N Location: 3473-3875 bp Feature: gene Location: 4066-4401 bp Feature: gene Location: 4436-6247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4700-5522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4700-5 5 22 bp Feature: domain Description: Intron_maturas2 Location: 5591-5900 bp Feature: domain Description: Intron_maturas2 Location: 5 5 91-5 900 bp Feature: gene Location: 6237-6944 bp Feature: domain Description: Bac_Flav_CT_N Location: 6363-6924 bp Feature: domain Description: Bac_Flav_CT_N Location: 6363-6924 bp Feature: gene Location: 6947-7522 bp Feature: domain Description: TraO Location: 7022-7517 bp Feature: domain Description: TraO Location: 7022-75 17 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), TraO (pfam10626)