myRT

myRT report for GCA_009025195.1_ASM902519v1

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Seq: WCKY01000018.1 Bacteroides salyersiae strain BIOML-A38 scaffold18_size106317, whole genome shotgun sequence (106317 bp)
Overview 1 RT 1: 17679-21057 bp Neighborhood of RT #1 [17679, 21149] COG3943 RVT-Retrons HTH_17 Feature: gene Location: 17679-18044 bp Feature: domain Description: COG3943 Location: 17721-17976 bp Feature: domain Description: COG3943 Location: 1 7721 -1 7976 bp Feature: gene Location: 18309-19190 bp Feature: gene Location: 19221-20078 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19383-19908 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 9383-1 9908 bp Feature: gene Location: 20103-20318 bp Feature: gene Location: 20784-21149 bp Feature: domain Description: HTH_17 Location: 20919-21057 bp Feature: domain Description: HTH_1 7 Location: 2091 9-21 057 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-Retrons, HTH_17 (pfam12728)

Seq: WCKY01000002.1 Bacteroides salyersiae strain BIOML-A38 scaffold2_size578898, whole genome shotgun sequence (578898 bp)
Overview 1 RT 1: 346181-351129 bp Neighborhood of RT #1 [346181, 351152] RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 346181-346444 bp Feature: gene Location: 346820-346984 bp Feature: gene Location: 347639-349912 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 347849-348452 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 347849-348452 bp Feature: domain Description: Cas1_I-II-III Location: 348914-349874 bp Feature: domain Description: Cas1_I-II-III Location: 348914-349874 bp Feature: gene Location: 349945-350733 bp Feature: domain Description: Cmr6_III-B Location: 350026-350722 bp Feature: domain Description: Cmr6_III-B Location: 35002 6-35072 2 bp Feature: gene Location: 350730-351152 bp Feature: domain Description: Cas_Cmr5 Location: 350802-351129 bp Feature: domain Description: Cas_Cmr5 Location: 350802 -35112 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: WCKY01000003.1 Bacteroides salyersiae strain BIOML-A38 scaffold3_size362985, whole genome shotgun sequence (362985 bp)
Overview 1 RT 1: 164380-172364 bp Neighborhood of RT #1 [164380, 172364] RVT-DGRs Feature: gene Location: 164380-168906 bp Feature: gene Location: 168912-169226 bp Feature: gene Location: 169592-170638 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 169799-170426 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 169799-170426 bp Feature: gene Location: 170699-170893 bp Feature: gene Location: 170937-172364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCKY01000006.1 Bacteroides salyersiae strain BIOML-A38 scaffold6_size268828, whole genome shotgun sequence (268828 bp)
Overview 1 RT 1: 196794-201457 bp Neighborhood of RT #1 [196794, 202437] TraG-D_C RVT-GII Intron_maturas2 HNHc YWFCY Feature: gene Location: 196794-197894 bp Feature: gene Location: 197969-198967 bp Feature: domain Description: TraG-D_C Location: 198347-198680 bp Feature: domain Description: TraG-D_C Location: 19834 7-198680 bp Feature: gene Location: 198931-200748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199198-200020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199198-200020 bp Feature: domain Description: Intron_maturas2 Location: 200206-200398 bp Feature: domain Description: Intron_maturas2 Location: 200206-200398 bp Feature: domain Description: HNHc Note: nucleases Location: 200569-200719 bp Feature: domain Description: HNHc Note: nucleases Location: 200569-200719 bp Feature: gene Location: 200953-201198 bp Feature: gene Location: 201274-202437 bp Feature: domain Description: YWFCY Location: 201280-201457 bp Feature: domain Description: YWFCY Location: 201280-2014 57 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293)