myRT

myRT report for GCA_009025235.1_ASM902523v1

Download annotations/find similar RTs

Seq: WCKW01000116.1 Bacteroides salyersiae strain BIOML-A36 scaffold116_size2789, whole genome shotgun sequence (2789 bp)
Overview 1 RT 1: 2-2787 bp Neighborhood of RT #1 [2, 2787] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2-337 bp Feature: gene Location: 301-2118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568-1 390 bp Feature: domain Description: Intron_maturas2 Location: 1576-1768 bp Feature: domain Description: Intron_maturas2 Location: 1 576-1 768 bp Feature: domain Description: HNHc Note: nucleases Location: 1939-2089 bp Feature: domain Description: HNHc Note: nucleases Location: 1 939-2089 bp Feature: gene Location: 2323-2568 bp Feature: gene Location: 2644-2787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WCKW01000012.1 Bacteroides salyersiae strain BIOML-A36 scaffold12_size106250, whole genome shotgun sequence (106250 bp)
Overview 1 RT 1: 17657-21035 bp Neighborhood of RT #1 [17657, 21127] COG3943 RVT-Retrons HTH_17 Feature: gene Location: 17657-18022 bp Feature: domain Description: COG3943 Location: 17699-17954 bp Feature: domain Description: COG3943 Location: 17699-17954 bp Feature: gene Location: 18287-19168 bp Feature: gene Location: 19199-20056 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19361-19886 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19361-19886 bp Feature: gene Location: 20081-20296 bp Feature: gene Location: 20762-21127 bp Feature: domain Description: HTH_17 Location: 20897-21035 bp Feature: domain Description: HTH_17 Location: 2 0897-2 1035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-Retrons, HTH_17 (pfam12728)

Seq: WCKW01000026.1 Bacteroides salyersiae strain BIOML-A36 scaffold26_size73314, whole genome shotgun sequence (73314 bp)
Overview 1 RT 1: 11597-19581 bp Neighborhood of RT #1 [11597, 19581] RVT-DGRs Feature: gene Location: 11597-16123 bp Feature: gene Location: 16129-16443 bp Feature: gene Location: 16809-17855 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17016-17643 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17016-17643 bp Feature: gene Location: 17916-18110 bp Feature: gene Location: 18154-19581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCKW01000050.1 Bacteroides salyersiae strain BIOML-A36 scaffold50_size43253, whole genome shotgun sequence (43253 bp)
Overview 1 RT 1: 32360-37308 bp Neighborhood of RT #1 [32360, 37331] RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 32360-32623 bp Feature: gene Location: 32999-33163 bp Feature: gene Location: 33818-36091 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 34028-34631 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 34 028-34 631 bp Feature: domain Description: Cas1_I-II-III Location: 35093-36053 bp Feature: domain Description: Cas1_I-II-III Location: 35093-36053 bp Feature: gene Location: 36124-36912 bp Feature: domain Description: Cmr6_III-B Location: 36205-36901 bp Feature: domain Description: Cmr6_III-B Location: 36205-36901 bp Feature: gene Location: 36909-37331 bp Feature: domain Description: Cas_Cmr5 Location: 36981-37308 bp Feature: domain Description: Cas_Cmr5 Location: 36981-37308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)