myRT

myRT report for GCA_009025265.1_ASM902526v1

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Seq: WCKP01000020.1 Bacteroides salyersiae strain BIOML-A29 scaffold20_size98744, whole genome shotgun sequence (98744 bp)
Overview 1 RT 1: 40476-45656 bp Neighborhood of RT #1 [40476, 45679] RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 40476-40730 bp Feature: gene Location: 41357-41572 bp Feature: gene Location: 42166-44439 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 42376-42979 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 42376-42979 bp Feature: domain Description: Cas1_I-II-III Location: 43441-44401 bp Feature: domain Description: Cas1 _I-II-III Location: 43441 -44401 bp Feature: gene Location: 44472-45260 bp Feature: domain Description: Cmr6_III-B Location: 44553-45249 bp Feature: domain Description: Cmr6_III-B Location: 44553-45249 bp Feature: gene Location: 45257-45679 bp Feature: domain Description: Cas_Cmr5 Location: 45329-45656 bp Feature: domain Description: Cas_Cmr5 Location: 45329-45656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: WCKP01000039.1 Bacteroides salyersiae strain BIOML-A29 scaffold39_size2416, whole genome shotgun sequence (2416 bp)
Overview 1 RT 1: 104-2318 bp Neighborhood of RT #1 [104, 2318] RVT_N RVT-GII GIIM Feature: gene Location: 104-1831 bp Feature: domain Description: RVT_N Location: 209-452 bp Feature: domain Description: RVT_N Location: 2 09-452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1145 bp Feature: domain Description: GIIM Note: maturase Location: 1196-1430 bp Feature: domain Description: GIIM Note: maturase Location: 1196-1430 bp Feature: gene Location: 2163-2318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCKP01000003.1 Bacteroides salyersiae strain BIOML-A29 scaffold3_size488445, whole genome shotgun sequence (488445 bp)
Overview 1 RT 1: 2796-6887 bp Neighborhood of RT #1 [2796, 6916] DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_J Feature: gene Location: 2796-3023 bp Feature: domain Description: DUF4141 Location: 2808-2964 bp Feature: domain Description: DUF4141 Location: 2808-2964 bp Feature: gene Location: 3063-3224 bp Feature: gene Location: 3544-5379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3838-4660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 83 8-4660 bp Feature: domain Description: Intron_maturas2 Location: 4819-5188 bp Feature: domain Description: Intron_maturas2 Location: 4819-5188 bp Feature: domain Description: HNHc Note: nucleases Location: 5212-5353 bp Feature: domain Description: HNHc Note: nucleases Location: 5212-53 53 bp Feature: gene Location: 5372-5908 bp Feature: gene Location: 5912-6916 bp Feature: domain Description: Bac_Flav_CT_J Location: 5921-6887 bp Feature: domain Description: Bac_Flav_CT_J Location: 5921-6887 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)

Seq: WCKP01000004.1 Bacteroides salyersiae strain BIOML-A29 scaffold4_size438167, whole genome shotgun sequence (438167 bp)
Overview 1 RT 1: 386371-396163 bp Neighborhood of RT #1 [386371, 396163] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 386371-386613 bp Feature: gene Location: 386795-387280 bp Feature: gene Location: 387277-388944 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 387853-388447 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 387853-3884 4 7 bp Feature: gene Location: 389099-395845 bp Feature: domain Description: Laminin_G_3 Location: 390563-390656 bp Feature: domain Description: Laminin_G_3 Location: 390563-390656 bp Feature: domain Description: Laminin_G_3 Location: 391301-391724 bp Feature: domain Description: Laminin_G_3 Location: 391301-391724 bp Feature: gene Location: 395858-396163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: WCKP01000006.1 Bacteroides salyersiae strain BIOML-A29 scaffold6_size232152, whole genome shotgun sequence (232152 bp)
Overview 1 RT 1: 227082-232145 bp Neighborhood of RT #1 [227082, 232150] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 227082-227396 bp Feature: domain Description: DUF3876 Location: 227136-227385 bp Feature: domain Description: DUF3876 Location: 227136-227385 bp Feature: gene Location: 227411-227992 bp Feature: domain Description: Bac_Flav_CT_G Location: 227528-227984 bp Feature: domain Description: Bac_Flav_CT_G Location: 2275 28-227984 bp Feature: gene Location: 227995-229695 bp Feature: domain Description: RVT_N Location: 228094-228337 bp Feature: domain Description: RVT_N Location: 228094-228337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228382-229030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228382-229030 bp Feature: domain Description: GIIM Note: maturase Location: 229081-229315 bp Feature: domain Description: GIIM Note: maturase Location: 229081-229315 bp Feature: gene Location: 229733-230080 bp Feature: gene Location: 230273-232150 bp Feature: domain Description: Bac_Flav_CT_G Location: 230345-232145 bp Feature: domain Description: Bac_Flav_CT_G Location: 230345 -232145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCKP01000008.1 Bacteroides salyersiae strain BIOML-A29 scaffold8_size211989, whole genome shotgun sequence (211989 bp)
Overview 1 RT 1: 94138-97494 bp Neighborhood of RT #1 [94138, 97494] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Feature: gene Location: 94138-95283 bp Feature: domain Description: Arm-DNA-bind_5 Location: 94162-94408 bp Feature: domain Description: Arm-DNA-bind_5 Location: 9416 2-94408 bp Feature: domain Description: Phage_int_SAM_5 Location: 94447-94732 bp Feature: domain Description: Phage_int_SAM_5 Location: 94447-94732 bp Feature: domain Description: INTN1_C_like Location: 94771-95245 bp Feature: domain Description: INTN1_C_like Location: 94771-95245 bp Feature: gene Location: 95332-95826 bp Feature: gene Location: 95828-97123 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96044-96635 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96 044-96 6 35 bp Feature: gene Location: 96770-97225 bp Feature: gene Location: 97327-97494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs