myRT

myRT report for GCA_009025275.1_ASM902527v1

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Seq: WCKQ01000010.1 Bacteroides salyersiae strain BIOML-A30 scaffold10_size211932, whole genome shotgun sequence (211932 bp)
Overview 1 RT 1: 94082-97438 bp Neighborhood of RT #1 [94082, 97438] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Feature: gene Location: 94082-95227 bp Feature: domain Description: Arm-DNA-bind_5 Location: 94106-94352 bp Feature: domain Description: Arm-DNA-bind_5 Location: 941 06-94352 bp Feature: domain Description: Phage_int_SAM_5 Location: 94391-94676 bp Feature: domain Description: Phage_int_SAM_5 Location: 94391 -94676 bp Feature: domain Description: INTN1_C_like Location: 94715-95189 bp Feature: domain Description: INTN1 _C_like Location: 9471 5-951 89 bp Feature: gene Location: 95276-95770 bp Feature: gene Location: 95772-97067 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 95988-96579 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 95988-96579 bp Feature: gene Location: 96714-97169 bp Feature: gene Location: 97271-97438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs

Seq: WCKQ01000023.1 Bacteroides salyersiae strain BIOML-A30 scaffold23_size28494, whole genome shotgun sequence (28494 bp)
Overview 1 RT 1: 21579-25640 bp Neighborhood of RT #1 [21579, 25699] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc DUF4141 Feature: gene Location: 21579-22583 bp Feature: domain Description: Bac_Flav_CT_J Location: 21588-22554 bp Feature: domain Description: Bac_Flav_CT_J Location: 2 1588-2 2 554 bp Feature: gene Location: 22587-23123 bp Feature: gene Location: 23116-24951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23410-24232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3410-2 42 32 bp Feature: domain Description: Intron_maturas2 Location: 24391-24760 bp Feature: domain Description: Intron_maturas2 Location: 2 4391-2 4760 bp Feature: domain Description: HNHc Note: nucleases Location: 24784-24925 bp Feature: domain Description: HNHc Note: nucleases Location: 2 4784-2 492 5 bp Feature: gene Location: 25271-25432 bp Feature: gene Location: 25472-25699 bp Feature: domain Description: DUF4141 Location: 25484-25640 bp Feature: domain Description: DUF4141 Location: 2 5484-2 5640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: WCKQ01000035.1 Bacteroides salyersiae strain BIOML-A30 scaffold35_size2416, whole genome shotgun sequence (2416 bp)
Overview 1 RT 1: 104-2318 bp Neighborhood of RT #1 [104, 2318] RVT_N RVT-GII GIIM Feature: gene Location: 104-1831 bp Feature: domain Description: RVT_N Location: 209-452 bp Feature: domain Description: RVT_N Location: 209-452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1145 bp Feature: domain Description: GIIM Note: maturase Location: 1196-1430 bp Feature: domain Description: GIIM Note: maturase Location: 1196-143 0 bp Feature: gene Location: 2163-2318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCKQ01000004.1 Bacteroides salyersiae strain BIOML-A30 scaffold4_size438167, whole genome shotgun sequence (438167 bp)
Overview 1 RT 1: 386371-396163 bp Neighborhood of RT #1 [386371, 396163] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 386371-386613 bp Feature: gene Location: 386795-387280 bp Feature: gene Location: 387277-388944 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 387853-388447 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 387853-3884 4 7 bp Feature: gene Location: 389087-395845 bp Feature: domain Description: Laminin_G_3 Location: 390551-390644 bp Feature: domain Description: Laminin_G_3 Location: 390551-39064 4 bp Feature: domain Description: Laminin_G_3 Location: 391289-391712 bp Feature: domain Description: Laminin_G_3 Location: 391289-391712 bp Feature: gene Location: 395858-396163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: WCKQ01000005.1 Bacteroides salyersiae strain BIOML-A30 scaffold5_size380655, whole genome shotgun sequence (380655 bp)
Overview 1 RT 1: 322281-327461 bp Neighborhood of RT #1 [322281, 327484] RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 322281-322535 bp Feature: gene Location: 323162-323377 bp Feature: gene Location: 323971-326244 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 324181-324784 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 324181-324784 bp Feature: domain Description: Cas1_I-II-III Location: 325246-326206 bp Feature: domain Description: Cas1_I-II-III Location: 325 246-326206 bp Feature: gene Location: 326277-327065 bp Feature: domain Description: Cmr6_III-B Location: 326358-327054 bp Feature: domain Description: Cmr6_III-B Location: 32635 8-32705 4 bp Feature: gene Location: 327062-327484 bp Feature: domain Description: Cas_Cmr5 Location: 327134-327461 bp Feature: domain Description: Cas_Cmr5 Location: 327134-327461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: WCKQ01000007.1 Bacteroides salyersiae strain BIOML-A30 scaffold7_size232152, whole genome shotgun sequence (232152 bp)
Overview 1 RT 1: 227082-232145 bp Neighborhood of RT #1 [227082, 232150] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 227082-227396 bp Feature: domain Description: DUF3876 Location: 227136-227385 bp Feature: domain Description: DUF3876 Location: 227136 -227385 bp Feature: gene Location: 227411-227992 bp Feature: domain Description: Bac_Flav_CT_G Location: 227528-227984 bp Feature: domain Description: Bac_Flav_CT_G Location: 227528-227984 bp Feature: gene Location: 227995-229695 bp Feature: domain Description: RVT_N Location: 228094-228337 bp Feature: domain Description: RVT_N Location: 228094-228337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228382-229030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228382-229030 bp Feature: domain Description: GIIM Note: maturase Location: 229081-229315 bp Feature: domain Description: GIIM Note: maturase Location: 229081-229315 bp Feature: gene Location: 229733-230080 bp Feature: gene Location: 230273-232150 bp Feature: domain Description: Bac_Flav_CT_G Location: 230345-232145 bp Feature: domain Description: Bac_Flav_CT_G Location: 230345-232145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)