myRT

myRT report for GCA_009025285.1_ASM902528v1

Download annotations/find similar RTs

Seq: WCKT01000010.1 Bacteroides salyersiae strain BIOML-A33 scaffold10_size259203, whole genome shotgun sequence (259203 bp)
Overview 1 RT 1: 141353-144709 bp Neighborhood of RT #1 [141353, 144709] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Feature: gene Location: 141353-142498 bp Feature: domain Description: Arm-DNA-bind_5 Location: 141377-141623 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1 41 377-1 41 623 bp Feature: domain Description: Phage_int_SAM_5 Location: 141662-141947 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 41 662-1 41 947 bp Feature: domain Description: INTN1_C_like Location: 141986-142460 bp Feature: domain Description: INTN1 _C_like Location: 1 41 986-1 42460 bp Feature: gene Location: 142547-143041 bp Feature: gene Location: 143043-144338 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 143259-143850 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 43259-1 43850 bp Feature: gene Location: 143985-144440 bp Feature: gene Location: 144542-144709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs

Seq: WCKT01000001.1 Bacteroides salyersiae strain BIOML-A33 scaffold1_size438166, whole genome shotgun sequence (438166 bp)
Overview 1 RT 1: 386370-396162 bp Neighborhood of RT #1 [386370, 396162] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 386370-386612 bp Feature: gene Location: 386794-387279 bp Feature: gene Location: 387276-388943 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 387852-388446 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 387852 -388446 bp Feature: gene Location: 389098-395844 bp Feature: domain Description: Laminin_G_3 Location: 390562-390655 bp Feature: domain Description: Laminin_G_3 Location: 390562 -390655 bp Feature: domain Description: Laminin_G_3 Location: 391300-391723 bp Feature: domain Description: Laminin_G_3 Location: 391300-39172 3 bp Feature: gene Location: 395857-396162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: WCKT01000004.1 Bacteroides salyersiae strain BIOML-A33 scaffold4_size292915, whole genome shotgun sequence (292915 bp)
Overview 1 RT 1: 586-9226 bp Neighborhood of RT #1 [586, 9255] RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_J Feature: gene Location: 586-2313 bp Feature: domain Description: RVT_N Location: 691-934 bp Feature: domain Description: RVT_N Location: 691-93 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 979-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 979-1627 bp Feature: domain Description: GIIM Note: maturase Location: 1678-1912 bp Feature: domain Description: GIIM Note: maturase Location: 1678-1912 bp Feature: gene Location: 2294-4690 bp Feature: domain Description: Bac_Flav_CT_G Location: 2414-4673 bp Feature: domain Description: Bac_Flav_CT_G Location: 2414-4673 bp Feature: gene Location: 4731-5111 bp Feature: domain Description: DUF3876 Location: 4812-5076 bp Feature: domain Description: DUF3 876 Location: 4812-5076 bp Feature: gene Location: 5135-5362 bp Feature: domain Description: DUF4141 Location: 5147-5303 bp Feature: domain Description: DUF4141 Location: 5147-53 03 bp Feature: gene Location: 5402-5563 bp Feature: gene Location: 5883-7718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6177-6999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6177-6999 bp Feature: domain Description: Intron_maturas2 Location: 7158-7527 bp Feature: domain Description: Intron_maturas2 Location: 7158-7527 bp Feature: domain Description: HNHc Note: nucleases Location: 7551-7692 bp Feature: domain Description: HNHc Note: nucleases Location: 7551-7692 bp Feature: gene Location: 7711-8247 bp Feature: gene Location: 8251-9255 bp Feature: domain Description: Bac_Flav_CT_J Location: 8260-9226 bp Feature: domain Description: Bac_Flav_CT_J Location: 8260-9226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783), DUF3876 (pfam12992), DUF4141 (pfam13605), Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)

Seq: WCKT01000007.1 Bacteroides salyersiae strain BIOML-A33 scaffold7_size232152, whole genome shotgun sequence (232152 bp)
Overview 1 RT 1: 227082-232145 bp Neighborhood of RT #1 [227082, 232150] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 227082-227396 bp Feature: domain Description: DUF3876 Location: 227136-227385 bp Feature: domain Description: DUF3876 Location: 227136-227385 bp Feature: gene Location: 227411-227992 bp Feature: domain Description: Bac_Flav_CT_G Location: 227528-227984 bp Feature: domain Description: Bac_Flav_CT_G Location: 227528-227984 bp Feature: gene Location: 227995-229695 bp Feature: domain Description: RVT_N Location: 228094-228337 bp Feature: domain Description: RVT_N Location: 228094 -228337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228382-229030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228382-229030 bp Feature: domain Description: GIIM Note: maturase Location: 229081-229315 bp Feature: domain Description: GIIM Note: maturase Location: 229081-229315 bp Feature: gene Location: 229733-230080 bp Feature: gene Location: 230273-232150 bp Feature: domain Description: Bac_Flav_CT_G Location: 230345-232145 bp Feature: domain Description: Bac_Flav_CT_G Location: 23034 5-23214 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCKT01000009.1 Bacteroides salyersiae strain BIOML-A33 scaffold9_size374782, whole genome shotgun sequence (374782 bp)
Overview 1 RT 1: 316514-321694 bp Neighborhood of RT #1 [316514, 321717] RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 316514-316768 bp Feature: gene Location: 317395-317610 bp Feature: gene Location: 318204-320477 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 318414-319017 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 318414-319017 bp Feature: domain Description: Cas1_I-II-III Location: 319479-320439 bp Feature: domain Description: Cas1_I-II-III Location: 319479-320439 bp Feature: gene Location: 320510-321298 bp Feature: domain Description: Cmr6_III-B Location: 320591-321287 bp Feature: domain Description: Cmr6_III-B Location: 3205 91-321287 bp Feature: gene Location: 321295-321717 bp Feature: domain Description: Cas_Cmr5 Location: 321367-321694 bp Feature: domain Description: Cas_Cmr5 Location: 321367-321694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)