myRT

myRT report for GCA_009025475.1_ASM902547v1

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Seq: WCID01000099.1 Bacteroides thetaiotaomicron strain AD135X1B NODE_100_length_726_cov_26.866444, whole genome shotgun sequence (726 bp)
Overview 1 RT 1: 3-720 bp Neighborhood of RT #1 [3, 725] RVT-DGRs Feature: gene Location: 3-725 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 213-720 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21 3-720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCID01000014.1 Bacteroides thetaiotaomicron strain AD135X1B NODE_14_length_143795_cov_43.092094, whole genome shotgun sequence (143795 bp)
Overview 1 RT 1: 139362-141973 bp Neighborhood of RT #1 [139362, 141973] RVT-GII RVT-GII GIIM Feature: gene Location: 139362-139490 bp Feature: gene Location: 139559-139804 bp Feature: gene Location: 140094-140582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140430-140568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140430-140568 bp Feature: gene Location: 140585-141274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140606-141008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140606-141008 bp Feature: domain Description: GIIM Note: maturase Location: 141020-141251 bp Feature: domain Description: GIIM Note: maturase Location: 14102 0-1412 51 bp Feature: gene Location: 141374-141631 bp Feature: gene Location: 141767-141973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WCID01000016.1 Bacteroides thetaiotaomicron strain AD135X1B NODE_16_length_132301_cov_40.226315, whole genome shotgun sequence (132301 bp)
Overview 1 RT 1: 55695-67652 bp Neighborhood of RT #1 [55695, 67652] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 55695-57494 bp Feature: domain Description: rpsA Location: 55764-57378 bp Feature: domain Description: rpsA Location: 55764-573 78 bp Feature: gene Location: 57663-63491 bp Feature: domain Description: DUF4011 Location: 58818-59331 bp Feature: domain Description: DUF4011 Location: 58818-593 3 1 bp Feature: domain Description: DEXXQc_SF1 Location: 59670-60270 bp Feature: domain Description: DEXXQc_SF1 Location: 59670-60270 bp Feature: domain Description: DEXXQc_SF1 Location: 61107-61857 bp Feature: domain Description: DEXXQc_SF1 Location: 61107-61857 bp Feature: domain Description: SF1_C_Upf1 Location: 61866-62379 bp Feature: domain Description: SF1_C_Upf1 Location: 61866-623 79 bp Feature: domain Description: MTES_1575 Location: 62529-62817 bp Feature: domain Description: MTES_1575 Location: 62529-62817 bp Feature: domain Description: DUF3320 Location: 62997-63141 bp Feature: domain Description: DUF3 3 20 Location: 62997-63 141 bp Feature: gene Location: 63525-64658 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63849-64401 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63 849-64401 bp Feature: gene Location: 64864-67050 bp Feature: gene Location: 67452-67652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: WCID01000002.1 Bacteroides thetaiotaomicron strain AD135X1B NODE_2_length_461196_cov_36.777001, whole genome shotgun sequence (461196 bp)
Overview 1 RT 1: 250966-254498 bp 2 RT 2: 398272-399815 bp Neighborhood of RT #1 [250966, 254498] DUF1566 Avd_like RVT-DGRs Neighborhood of RT #2 [398272, 399815] RVT-GII HTH_28 Feature: gene Location: 250966-251775 bp Feature: domain Description: DUF1566 Location: 251497-251746 bp Feature: domain Description: DUF1566 Location: 2514 97-25174 6 bp Feature: gene Location: 251922-252329 bp Feature: domain Description: Avd_like Location: 251955-252264 bp Feature: domain Description: Avd_like Location: 251955-252264 bp Feature: gene Location: 252344-253765 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 252719-253421 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 252719-2534 21 bp Feature: gene Location: 253728-254006 bp Feature: gene Location: 254205-254498 bp Feature: gene Location: 398272-398634 bp Feature: gene Location: 398638-398847 bp Feature: gene Location: 398877-399074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398880-399072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398880-399072 bp Feature: gene Location: 399195-399485 bp Feature: domain Description: HTH_28 Location: 399219-399363 bp Feature: domain Description: HTH_28 Location: 399219-399363 bp Feature: gene Location: 399663-399815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, RVT-GII, HTH_28 (pfam13518)

Seq: WCID01000057.1 Bacteroides thetaiotaomicron strain AD135X1B NODE_57_length_13591_cov_41.433007, whole genome shotgun sequence (13591 bp)
Overview 1 RT 1: 5640-13585 bp Neighborhood of RT #1 [5640, 13590] Laminin_G_3 CotH LRR_AMN1 RVT-DGRs Feature: gene Location: 5640-12428 bp Feature: domain Description: Laminin_G_3 Location: 8076-8457 bp Feature: domain Description: Laminin_G_3 Location: 8076-845 7 bp Feature: domain Description: CotH Location: 8721-9765 bp Feature: domain Description: CotH Location: 8721-9765 bp Feature: domain Description: LRR_AMN1 Location: 10182-10647 bp Feature: domain Description: LRR_AMN1 Location: 10182-10647 bp Feature: gene Location: 12490-12657 bp Feature: gene Location: 12802-13590 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13078-13585 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13078-135 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs

Seq: WCID01000059.1 Bacteroides thetaiotaomicron strain AD135X1B NODE_59_length_12394_cov_39.504443, whole genome shotgun sequence (12394 bp)
Overview 1 RT 1: 120-4305 bp Neighborhood of RT #1 [120, 4340] RVT-UG12 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 120-1253 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 555-1044 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 555-1044 bp Feature: gene Location: 1422-2645 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1452-1689 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1452-16 89 bp Feature: domain Description: Phage_int_SAM_5 Location: 1752-2055 bp Feature: domain Description: Phage_int_SAM_5 Location: 1752-2055 bp Feature: domain Description: INTN1_C_like Location: 2109-2595 bp Feature: domain Description: INTN1_C_like Location: 2109-2595 bp Feature: gene Location: 3000-4340 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3126-3354 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3126 -3354 bp Feature: domain Description: Phage_int_SAM_5 Location: 3432-3711 bp Feature: domain Description: Phage_int_SAM_5 Location: 3432-3711 bp Feature: domain Description: INTN1_C_like Location: 3771-4305 bp Feature: domain Description: INTN1_C_like Location: 3771-4305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG12, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: WCID01000005.1 Bacteroides thetaiotaomicron strain AD135X1B NODE_5_length_310074_cov_43.795597, whole genome shotgun sequence (310074 bp)
Overview 1 RT 1: 281794-291272 bp Neighborhood of RT #1 [281794, 291272] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 281794-288540 bp Feature: domain Description: Laminin_G_3 Location: 283258-283348 bp Feature: domain Description: Laminin_G_3 Location: 283258-283348 bp Feature: domain Description: Laminin_G_3 Location: 283996-284419 bp Feature: domain Description: Laminin_G_3 Location: 283996-284419 bp Feature: gene Location: 288791-288991 bp Feature: gene Location: 289063-290367 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 289276-289870 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28927 6-28987 0 bp Feature: gene Location: 290364-290849 bp Feature: gene Location: 291030-291272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WCID01000073.1 Bacteroides thetaiotaomicron strain AD135X1B NODE_73_length_2496_cov_80.260447, whole genome shotgun sequence (2496 bp)
Overview 1 RT 1: 110-2440 bp Neighborhood of RT #1 [110, 2440] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 110-1921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1196 bp Feature: domain Description: Intron_maturas2 Location: 1271-1586 bp Feature: domain Description: Intron_maturas2 Location: 1271-158 6 bp Feature: domain Description: HNHc Note: nucleases Location: 1742-1892 bp Feature: domain Description: HNHc Note: nucleases Location: 1742-18 92 bp Feature: gene Location: 2267-2440 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WCID01000085.1 Bacteroides thetaiotaomicron strain AD135X1B NODE_86_length_1170_cov_71.871524, whole genome shotgun sequence (1170 bp)
Overview 1 RT 1: 3-679 bp Neighborhood of RT #1 [3, 1167] RVT-DGRs Feature: gene Location: 3-476 bp Feature: gene Location: 478-1167 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 481-679 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 481-679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs