myRT

myRT report for GCA_009025495.1_ASM902549v1

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Seq: WCII01000010.1 Bacteroides fragilis strain TL139C_2B NODE_10_length_171978_cov_64.351578, whole genome shotgun sequence (171978 bp)
Overview 1 RT 1: 103098-112056 bp Neighborhood of RT #1 [103098, 112064] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 103098-105287 bp Feature: domain Description: GlnA3 Location: 103173-105285 bp Feature: domain Description: GlnA3 Location: 1 031 73-1 05285 bp Feature: gene Location: 105527-107746 bp Feature: gene Location: 107953-109065 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 108268-108817 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 08268-1 0881 7 bp Feature: gene Location: 109207-111000 bp Feature: domain Description: rpsA Location: 109285-110893 bp Feature: domain Description: rpsA Location: 1 09285-1 1 0893 bp Feature: gene Location: 111150-112064 bp Feature: domain Description: RNase_Z Location: 111165-112056 bp Feature: domain Description: RNase_Z Location: 1 1 1 1 65-1 1 2056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: WCII01000001.1 Bacteroides fragilis strain TL139C_2B NODE_1_length_1226009_cov_61.535870, whole genome shotgun sequence (1226009 bp)
Overview 1 RT 1: 219205-222502 bp 2 RT 2: 1075621-1080331 bp Neighborhood of RT #1 [219205, 222687] RVT-DGRs DUF4494 Neighborhood of RT #2 [1075621, 1080331] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 219205-219681 bp Feature: gene Location: 219697-220077 bp Feature: gene Location: 220282-221268 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 220492-221077 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 2 0492 -2 2 1077 bp Feature: gene Location: 221582-222067 bp Feature: gene Location: 222070-222687 bp Feature: domain Description: DUF4494 Location: 222088-222502 bp Feature: domain Description: DUF4494 Location: 2 2 2 088-2 2 2 502 bp Feature: gene Location: 1075621-1076031 bp Feature: domain Description: Cas_Cmr5 Location: 1075669-1075915 bp Feature: domain Description: Cas_Cmr5 Location: 1075669-1075915 bp Feature: gene Location: 1076028-1076978 bp Feature: domain Description: Cmr6_III-B Location: 1076190-1076967 bp Feature: domain Description: Cmr6_III-B Location: 1076190-1076967 bp Feature: gene Location: 1076998-1079268 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1077205-1077811 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 10772 05-1077811 bp Feature: domain Description: Cas1_I-II-III Location: 1078270-1079227 bp Feature: domain Description: Cas1_I-II-III Location: 10782 70-10792 2 7 bp Feature: gene Location: 1079262-1079552 bp Feature: domain Description: Cas2_I_II_III Location: 1079289-1079499 bp Feature: domain Description: Cas2 _I_II_III Location: 10792 89-1079499 bp Feature: gene Location: 1080203-1080331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF4494 (pfam14902), Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: WCII01000007.1 Bacteroides fragilis strain TL139C_2B NODE_7_length_346804_cov_64.958197, whole genome shotgun sequence (346804 bp)
Overview 1 RT 1: 190598-194079 bp Neighborhood of RT #1 [190598, 194153] DUF4134 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4133 Feature: gene Location: 190598-190921 bp Feature: domain Description: DUF4134 Location: 190622-190907 bp Feature: domain Description: DUF413 4 Location: 190622-190907 bp Feature: gene Location: 190984-191274 bp Feature: domain Description: DUF4134 Location: 191059-191257 bp Feature: domain Description: DUF413 4 Location: 191059-191257 bp Feature: gene Location: 191816-193627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192080-192902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192080-192902 bp Feature: domain Description: Intron_maturas2 Location: 193091-193301 bp Feature: domain Description: Intron_maturas2 Location: 193 091-193 3 01 bp Feature: domain Description: HNHc Note: nucleases Location: 193451-193556 bp Feature: domain Description: HNHc Note: nucleases Location: 193 451-193 556 bp Feature: gene Location: 193652-193846 bp Feature: domain Description: DUF4134 Location: 193742-193832 bp Feature: domain Description: DUF413 4 Location: 193 742-193 83 2 bp Feature: gene Location: 193860-194153 bp Feature: domain Description: DUF4133 Location: 193899-194079 bp Feature: domain Description: DUF413 3 Location: 193 899-194079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571)