myRT

myRT report for GCA_009025625.1_ASM902562v1

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Seq: WCKS01000012.1 Bacteroides salyersiae strain BIOML-A32 scaffold12_size187057, whole genome shotgun sequence (187057 bp)
Overview 1 RT 1: 53066-58269 bp Neighborhood of RT #1 [53066, 58269] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Feature: gene Location: 53066-53488 bp Feature: domain Description: Cas_Cmr5 Location: 53138-53465 bp Feature: domain Description: Cas_Cmr5 Location: 531 38-53465 bp Feature: gene Location: 53485-54273 bp Feature: domain Description: Cmr6_III-B Location: 53566-54262 bp Feature: domain Description: Cmr6_III-B Location: 53566-54262 bp Feature: gene Location: 54306-56579 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 54516-55119 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5451 6-551 1 9 bp Feature: domain Description: Cas1_I-II-III Location: 55581-56541 bp Feature: domain Description: Cas1 _I-II-III Location: 55581 -56541 bp Feature: gene Location: 57173-57388 bp Feature: gene Location: 58015-58269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: WCKS01000020.1 Bacteroides salyersiae strain BIOML-A32 scaffold20_size124055, whole genome shotgun sequence (124055 bp)
Overview 1 RT 1: 6204-14633 bp Neighborhood of RT #1 [6204, 16408] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 6204-7349 bp Feature: domain Description: Arm-DNA-bind_5 Location: 6228-6474 bp Feature: domain Description: Arm-DNA-bind_5 Location: 62 2 8-6474 bp Feature: domain Description: Phage_int_SAM_5 Location: 6513-6798 bp Feature: domain Description: Phage_int_SAM_5 Location: 6513-6798 bp Feature: domain Description: INTN1_C_like Location: 6837-7311 bp Feature: domain Description: INTN1_C_like Location: 6837-7311 bp Feature: gene Location: 7398-7892 bp Feature: gene Location: 7894-9189 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8110-8701 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8110-8701 bp Feature: gene Location: 8836-9291 bp Feature: gene Location: 9620-16408 bp Feature: domain Description: Laminin_G_3 Location: 12056-12437 bp Feature: domain Description: Laminin_G_3 Location: 12 056-12 437 bp Feature: domain Description: pfam08757 Location: 13232-13556 bp Feature: domain Description: pfam08757 Location: 132 32 -13556 bp Feature: domain Description: LRR_AMN1 Location: 14162-14633 bp Feature: domain Description: LRR_AMN1 Location: 14162 -14633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034)

Seq: WCKS01000002.1 Bacteroides salyersiae strain BIOML-A32 scaffold2_size438239, whole genome shotgun sequence (438239 bp)
Overview 1 RT 1: 386443-396235 bp Neighborhood of RT #1 [386443, 396235] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 386443-386685 bp Feature: gene Location: 386867-387352 bp Feature: gene Location: 387349-389016 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 387925-388519 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 87925-3 88519 bp Feature: gene Location: 389171-395917 bp Feature: domain Description: Laminin_G_3 Location: 390635-390728 bp Feature: domain Description: Laminin_G_3 Location: 3 9063 5-3 90728 bp Feature: domain Description: Laminin_G_3 Location: 391373-391796 bp Feature: domain Description: Laminin_G_3 Location: 3 913 73 -3 91796 bp Feature: gene Location: 395930-396235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: WCKS01000034.1 Bacteroides salyersiae strain BIOML-A32 scaffold34_size28710, whole genome shotgun sequence (28710 bp)
Overview 1 RT 1: 21795-25856 bp Neighborhood of RT #1 [21795, 25915] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc DUF4141 Feature: gene Location: 21795-22799 bp Feature: domain Description: Bac_Flav_CT_J Location: 21804-22770 bp Feature: domain Description: Bac_Flav_CT_J Location: 21804 -22770 bp Feature: gene Location: 22803-23339 bp Feature: gene Location: 23332-25167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23626-24448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23626-24 4 4 8 bp Feature: domain Description: Intron_maturas2 Location: 24607-24976 bp Feature: domain Description: Intron_maturas2 Location: 24 607-24 976 bp Feature: domain Description: HNHc Note: nucleases Location: 25000-25141 bp Feature: domain Description: HNHc Note: nucleases Location: 25000-2514 1 bp Feature: gene Location: 25487-25648 bp Feature: gene Location: 25688-25915 bp Feature: domain Description: DUF4141 Location: 25700-25856 bp Feature: domain Description: DUF4 14 1 Location: 25700-25856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: WCKS01000051.1 Bacteroides salyersiae strain BIOML-A32 scaffold51_size2416, whole genome shotgun sequence (2416 bp)
Overview 1 RT 1: 104-2318 bp Neighborhood of RT #1 [104, 2318] RVT_N RVT-GII GIIM Feature: gene Location: 104-1831 bp Feature: domain Description: RVT_N Location: 209-452 bp Feature: domain Description: RVT_N Location: 209-45 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1145 bp Feature: domain Description: GIIM Note: maturase Location: 1196-1430 bp Feature: domain Description: GIIM Note: maturase Location: 1196-1430 bp Feature: gene Location: 2163-2318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCKS01000005.1 Bacteroides salyersiae strain BIOML-A32 scaffold5_size232152, whole genome shotgun sequence (232152 bp)
Overview 1 RT 1: 227082-232145 bp Neighborhood of RT #1 [227082, 232150] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 227082-227396 bp Feature: domain Description: DUF3876 Location: 227136-227385 bp Feature: domain Description: DUF3876 Location: 227136 -227385 bp Feature: gene Location: 227411-227992 bp Feature: domain Description: Bac_Flav_CT_G Location: 227528-227984 bp Feature: domain Description: Bac_Flav_CT_G Location: 227528-227984 bp Feature: gene Location: 227995-229695 bp Feature: domain Description: RVT_N Location: 228094-228337 bp Feature: domain Description: RVT_N Location: 228094-228337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228382-229030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228382-229030 bp Feature: domain Description: GIIM Note: maturase Location: 229081-229315 bp Feature: domain Description: GIIM Note: maturase Location: 229081-229315 bp Feature: gene Location: 229733-230080 bp Feature: gene Location: 230273-232150 bp Feature: domain Description: Bac_Flav_CT_G Location: 230345-232145 bp Feature: domain Description: Bac_Flav_CT_G Location: 230345-232145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)