myRT

myRT report for GCA_009025765.1_ASM902576v1

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Seq: WCHS01000005.1 Pseudomonas aeruginosa strain GO32 NODE_5_length_375841_cov_18.302400, whole genome shotgun sequence (375841 bp)
Overview 1 RT 1: 40796-44842 bp Neighborhood of RT #1 [40796, 44871] RVT-GII GIIM DUF3085 Feature: gene Location: 40796-41512 bp Feature: gene Location: 41867-42511 bp Feature: gene Location: 42104-43303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42269-42884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42269-42884 bp Feature: domain Description: GIIM Note: maturase Location: 42941-43157 bp Feature: domain Description: GIIM Note: maturase Location: 42941 -431 57 bp Feature: gene Location: 43643-44440 bp Feature: gene Location: 44506-44871 bp Feature: domain Description: DUF3085 Location: 44572-44842 bp Feature: domain Description: DUF3085 Location: 44572-44842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF3085 (pfam11284)

Seq: WCHS01000006.1 Pseudomonas aeruginosa strain GO32 NODE_6_length_343111_cov_21.205578, whole genome shotgun sequence (343111 bp)
Overview 1 RT 1: 14518-23379 bp 2 RT 2: 39643-49940 bp Neighborhood of RT #1 [14518, 23387] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [39643, 49951] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 14518-15192 bp Feature: domain Description: NTP_transferase_like_1 Location: 14524-15163 bp Feature: domain Description: NTP_transferase_like_1 Location: 1452 4-15163 bp Feature: gene Location: 15189-16205 bp Feature: domain Description: COG3178 Location: 15192-16188 bp Feature: domain Description: COG3178 Location: 15192 -16188 bp Feature: gene Location: 17477-19189 bp Feature: RT Description: RVT_N Location: 17534-17777 bp Feature: RT Description: RVT_N Location: 17534-17777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17822-18455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1782 2 -18455 bp Feature: domain Description: YkfC Location: 18668-18818 bp Feature: domain Description: YkfC Location: 18668-18818 bp Feature: domain Description: HNH Note: nucleases Location: 18995-19133 bp Feature: domain Description: HNH Note: nucleases Location: 18995-19133 bp Feature: gene Location: 19322-22114 bp Feature: domain Description: LptD Location: 19517-22100 bp Feature: domain Description: LptD Location: 19517-2 2 100 bp Feature: gene Location: 22173-23387 bp Feature: domain Description: PRK10770 Location: 22185-23379 bp Feature: domain Description: PRK10770 Location: 2 2 185-2 3379 bp Feature: gene Location: 39643-41496 bp Feature: domain Description: PRK05658 Location: 39655-41494 bp Feature: domain Description: PRK05658 Location: 39655-41494 bp Feature: gene Location: 41603-45340 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 41711-42368 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 41711-42 368 bp Feature: domain Description: PRK09776 Location: 42581-43052 bp Feature: domain Description: PRK09776 Location: 42 581-43052 bp Feature: domain Description: PAS Location: 43124-43634 bp Feature: domain Description: PAS Location: 4312 4-43634 bp Feature: domain Description: PRK10060 Location: 43643-45290 bp Feature: domain Description: PRK10060 Location: 43643-452 90 bp Feature: gene Location: 46421-48106 bp Feature: RT Description: RVT_N Location: 46478-46718 bp Feature: RT Description: RVT_N Location: 46478-46718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46766-47402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46766-47402 bp Feature: domain Description: GIIM Note: maturase Location: 47456-47687 bp Feature: domain Description: GIIM Note: maturase Location: 47456-47687 bp Feature: domain Description: HNH Note: nucleases Location: 47939-48077 bp Feature: domain Description: HNH Note: nucleases Location: 47939-48077 bp Feature: gene Location: 48434-48571 bp Feature: gene Location: 48830-49951 bp Feature: domain Description: COG3177 Location: 48848-49940 bp Feature: domain Description: COG3177 Location: 48848-49940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )