myRT

myRT report for GCA_009025795.1_ASM902579v1

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Seq: WCKU01000113.1 Bacteroides salyersiae strain BIOML-A34 scaffold113_size14929, whole genome shotgun sequence (14929 bp)
Overview 1 RT 1: 10915-14922 bp Neighborhood of RT #1 [10915, 14927] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 10915-11229 bp Feature: domain Description: DUF3876 Location: 10969-11218 bp Feature: domain Description: DUF3876 Location: 1 0969-1 1 21 8 bp Feature: gene Location: 11244-11825 bp Feature: domain Description: Bac_Flav_CT_G Location: 11361-11817 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 1 361 -1 1 81 7 bp Feature: gene Location: 11828-13528 bp Feature: domain Description: RVT_N Location: 11927-12170 bp Feature: domain Description: RVT_N Location: 1 1 927-1 21 70 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12215-12863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 221 5-1 2863 bp Feature: domain Description: GIIM Note: maturase Location: 12914-13148 bp Feature: domain Description: GIIM Note: maturase Location: 1 291 4-1 31 48 bp Feature: gene Location: 14106-14927 bp Feature: domain Description: Bac_Flav_CT_G Location: 14109-14922 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 41 09-1 4922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCKU01000136.1 Bacteroides salyersiae strain BIOML-A34 scaffold136_size9180, whole genome shotgun sequence (9180 bp)
Overview 1 RT 1: 4953-8309 bp Neighborhood of RT #1 [4953, 8309] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Feature: gene Location: 4953-6098 bp Feature: domain Description: Arm-DNA-bind_5 Location: 4977-5223 bp Feature: domain Description: Arm-DNA-bind_5 Location: 4977-52 2 3 bp Feature: domain Description: Phage_int_SAM_5 Location: 5262-5547 bp Feature: domain Description: Phage_int_SAM_5 Location: 52 62 -5547 bp Feature: domain Description: INTN1_C_like Location: 5586-6060 bp Feature: domain Description: INTN1_C_like Location: 5586-6060 bp Feature: gene Location: 6147-6641 bp Feature: gene Location: 6643-7938 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6859-7450 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6859-7450 bp Feature: gene Location: 7585-8040 bp Feature: gene Location: 8142-8309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs

Seq: WCKU01000150.1 Bacteroides salyersiae strain BIOML-A34 scaffold150_size7627, whole genome shotgun sequence (7627 bp)
Overview 1 RT 1: 1813-7129 bp Neighborhood of RT #1 [1813, 7626] RVT-DGRs Feature: gene Location: 1813-2055 bp Feature: gene Location: 2237-2695 bp Feature: gene Location: 2719-7626 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6535-7129 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 653 5-7129 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCKU01000023.1 Bacteroides salyersiae strain BIOML-A34 scaffold23_size54400, whole genome shotgun sequence (54353 bp)
Overview 1 RT 1: 49595-53070 bp Neighborhood of RT #1 [49595, 53108] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Feature: gene Location: 49595-50017 bp Feature: domain Description: Cas_Cmr5 Location: 49667-49994 bp Feature: domain Description: Cas_Cmr5 Location: 4 9667-4 9994 bp Feature: gene Location: 50014-50802 bp Feature: domain Description: Cmr6_III-B Location: 50095-50791 bp Feature: domain Description: Cmr6_III-B Location: 50095-50791 bp Feature: gene Location: 50835-53108 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 51045-51648 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5104 5-5164 8 bp Feature: domain Description: Cas1_I-II-III Location: 52110-53070 bp Feature: domain Description: Cas1_I-II-III Location: 52110-53070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: WCKU01000056.1 Bacteroides salyersiae strain BIOML-A34 scaffold56_size32640, whole genome shotgun sequence (32640 bp)
Overview 1 RT 1: 20285-29726 bp Neighborhood of RT #1 [20285, 29755] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_J Feature: gene Location: 20285-20530 bp Feature: domain Description: Bac_Flav_CT_G Location: 20288-20513 bp Feature: domain Description: Bac_Flav_CT_G Location: 20288-205 13 bp Feature: gene Location: 20733-20888 bp Feature: gene Location: 21086-22813 bp Feature: domain Description: RVT_N Location: 21191-21434 bp Feature: domain Description: RVT_N Location: 21191-21434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21479-22127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21479-22127 bp Feature: domain Description: GIIM Note: maturase Location: 22178-22412 bp Feature: domain Description: GIIM Note: maturase Location: 22178-22412 bp Feature: gene Location: 22794-25190 bp Feature: domain Description: Bac_Flav_CT_G Location: 22914-25173 bp Feature: domain Description: Bac_Flav_CT_G Location: 22914-25 173 bp Feature: gene Location: 25231-25611 bp Feature: domain Description: DUF3876 Location: 25312-25576 bp Feature: domain Description: DUF3876 Location: 25 312-25 5 76 bp Feature: gene Location: 25635-25862 bp Feature: domain Description: DUF4141 Location: 25647-25803 bp Feature: domain Description: DUF4141 Location: 25 647-25 803 bp Feature: gene Location: 25902-26063 bp Feature: gene Location: 26383-28218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26677-27499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26677-27499 bp Feature: domain Description: Intron_maturas2 Location: 27658-28027 bp Feature: domain Description: Intron_maturas2 Location: 2765 8-28027 bp Feature: domain Description: HNHc Note: nucleases Location: 28051-28192 bp Feature: domain Description: HNHc Note: nucleases Location: 2805 1-28192 bp Feature: gene Location: 28211-28747 bp Feature: gene Location: 28751-29755 bp Feature: domain Description: Bac_Flav_CT_J Location: 28760-29726 bp Feature: domain Description: Bac_Flav_CT_J Location: 28760-29726 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992), DUF4141 (pfam13605), Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)