myRT

myRT report for GCA_009025815.1_ASM902581v1

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Seq: WCKR01000001.1 Bacteroides salyersiae strain BIOML-A31 scaffold1_size488277, whole genome shotgun sequence (488277 bp)
Overview 1 RT 1: 2796-6887 bp Neighborhood of RT #1 [2796, 6916] DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_J Feature: gene Location: 2796-3023 bp Feature: domain Description: DUF4141 Location: 2808-2964 bp Feature: domain Description: DUF41 41 Location: 2808-2964 bp Feature: gene Location: 3063-3224 bp Feature: gene Location: 3544-5379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3838-4660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3838-4660 bp Feature: domain Description: Intron_maturas2 Location: 4819-5188 bp Feature: domain Description: Intron_maturas2 Location: 481 9-51 88 bp Feature: domain Description: HNHc Note: nucleases Location: 5212-5353 bp Feature: domain Description: HNHc Note: nucleases Location: 521 2-5353 bp Feature: gene Location: 5372-5908 bp Feature: gene Location: 5912-6916 bp Feature: domain Description: Bac_Flav_CT_J Location: 5921-6887 bp Feature: domain Description: Bac_Flav_CT_J Location: 5921 -6887 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)

Seq: WCKR01000026.1 Bacteroides salyersiae strain BIOML-A31 scaffold26_size58165, whole genome shotgun sequence (58165 bp)
Overview 1 RT 1: 53066-58164 bp Neighborhood of RT #1 [53066, 58164] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Feature: gene Location: 53066-53488 bp Feature: domain Description: Cas_Cmr5 Location: 53138-53465 bp Feature: domain Description: Cas_Cmr5 Location: 53138-53465 bp Feature: gene Location: 53485-54273 bp Feature: domain Description: Cmr6_III-B Location: 53566-54262 bp Feature: domain Description: Cmr6_III-B Location: 53566-542 62 bp Feature: gene Location: 54306-56579 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 54516-55119 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 54516-55119 bp Feature: domain Description: Cas1_I-II-III Location: 55581-56541 bp Feature: domain Description: Cas1_I-II-III Location: 55581-56541 bp Feature: gene Location: 57173-57388 bp Feature: gene Location: 58015-58164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: WCKR01000029.1 Bacteroides salyersiae strain BIOML-A31 scaffold29_size38998, whole genome shotgun sequence (38998 bp)
Overview 1 RT 1: 25048-32757 bp Neighborhood of RT #1 [25048, 32795] CotH LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 25048-29379 bp Feature: domain Description: CotH Location: 26209-26716 bp Feature: domain Description: CotH Location: 26209-26716 bp Feature: domain Description: LRR_AMN1 Location: 27133-27601 bp Feature: domain Description: LRR_AMN1 Location: 2713 3 -27601 bp Feature: gene Location: 29439-29606 bp Feature: gene Location: 29810-31105 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30026-30617 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 0026-3 0617 bp Feature: gene Location: 31107-31601 bp Feature: gene Location: 31650-32795 bp Feature: domain Description: Arm-DNA-bind_5 Location: 31674-31920 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3 1674-3 1920 bp Feature: domain Description: Phage_int_SAM_5 Location: 31959-32244 bp Feature: domain Description: Phage_int_SAM_5 Location: 3 1959-3 2244 bp Feature: domain Description: INTN1_C_like Location: 32283-32757 bp Feature: domain Description: INTN1_C_like Location: 3 2283 -3 2757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: WCKR01000049.1 Bacteroides salyersiae strain BIOML-A31 scaffold49_size2416, whole genome shotgun sequence (2416 bp)
Overview 1 RT 1: 104-2318 bp Neighborhood of RT #1 [104, 2318] RVT_N RVT-GII GIIM Feature: gene Location: 104-1831 bp Feature: domain Description: RVT_N Location: 209-452 bp Feature: domain Description: RVT_N Location: 209-4 52 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 97-114 5 bp Feature: domain Description: GIIM Note: maturase Location: 1196-1430 bp Feature: domain Description: GIIM Note: maturase Location: 1196-14 30 bp Feature: gene Location: 2163-2318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCKR01000004.1 Bacteroides salyersiae strain BIOML-A31 scaffold4_size378450, whole genome shotgun sequence (378450 bp)
Overview 1 RT 1: 366733-376525 bp Neighborhood of RT #1 [366733, 376525] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 366733-366975 bp Feature: gene Location: 367157-367642 bp Feature: gene Location: 367639-369306 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 368215-368809 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 368215 -368809 bp Feature: gene Location: 369461-376207 bp Feature: domain Description: Laminin_G_3 Location: 370925-371018 bp Feature: domain Description: Laminin_G_3 Location: 370925 -371018 bp Feature: domain Description: Laminin_G_3 Location: 371663-372086 bp Feature: domain Description: Laminin_G_3 Location: 371663-372086 bp Feature: gene Location: 376220-376525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: WCKR01000005.1 Bacteroides salyersiae strain BIOML-A31 scaffold5_size232152, whole genome shotgun sequence (232152 bp)
Overview 1 RT 1: 227082-232145 bp Neighborhood of RT #1 [227082, 232150] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 227082-227396 bp Feature: domain Description: DUF3876 Location: 227136-227385 bp Feature: domain Description: DUF3876 Location: 227136 -227385 bp Feature: gene Location: 227411-227992 bp Feature: domain Description: Bac_Flav_CT_G Location: 227528-227984 bp Feature: domain Description: Bac_Flav_CT_G Location: 227528-227984 bp Feature: gene Location: 227995-229695 bp Feature: domain Description: RVT_N Location: 228094-228337 bp Feature: domain Description: RVT_N Location: 228094-228337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228382-229030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228382-229030 bp Feature: domain Description: GIIM Note: maturase Location: 229081-229315 bp Feature: domain Description: GIIM Note: maturase Location: 229081-229315 bp Feature: gene Location: 229733-230080 bp Feature: gene Location: 230273-232150 bp Feature: domain Description: Bac_Flav_CT_G Location: 230345-232145 bp Feature: domain Description: Bac_Flav_CT_G Location: 230345-232145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)