myRT

myRT report for GCA_009025835.1_ASM902583v1

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Seq: WCKO01000010.1 Bacteroides salyersiae strain BIOML-A28 scaffold10_size190364, whole genome shotgun sequence (190364 bp)
Overview 1 RT 1: 63919-70569 bp Neighborhood of RT #1 [63919, 70569] Relaxase Relaxase RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 63919-65361 bp Feature: domain Description: Relaxase Location: 64243-64534 bp Feature: domain Description: Relaxase Location: 64243-64534 bp Feature: domain Description: Relaxase Location: 64843-65095 bp Feature: domain Description: Relaxase Location: 64843-65095 bp Feature: gene Location: 65702-66478 bp Feature: gene Location: 67196-68848 bp Feature: domain Description: RVT_N Location: 67250-67493 bp Feature: domain Description: RVT_N Location: 67250-67493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67538-68186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67538-681 86 bp Feature: domain Description: GIIM Note: maturase Location: 68240-68471 bp Feature: domain Description: GIIM Note: maturase Location: 68240-68471 bp Feature: gene Location: 68853-70058 bp Feature: domain Description: TraG-D_C Location: 69435-69768 bp Feature: domain Description: TraG-D_C Location: 69435-69768 bp Feature: gene Location: 70144-70569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: WCKO01000012.1 Bacteroides salyersiae strain BIOML-A28 scaffold12_size318023, whole genome shotgun sequence (318023 bp)
Overview 1 RT 1: 293767-298715 bp Neighborhood of RT #1 [293767, 298738] RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 293767-294030 bp Feature: gene Location: 294406-294570 bp Feature: gene Location: 295225-297498 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 295435-296038 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 95435-2 96038 bp Feature: domain Description: Cas1_I-II-III Location: 296500-297460 bp Feature: domain Description: Cas1_I-II-III Location: 2 96500-2 97460 bp Feature: gene Location: 297531-298319 bp Feature: domain Description: Cmr6_III-B Location: 297612-298308 bp Feature: domain Description: Cmr6_III-B Location: 2 97612 -2 98308 bp Feature: gene Location: 298316-298738 bp Feature: domain Description: Cas_Cmr5 Location: 298388-298715 bp Feature: domain Description: Cas_Cmr5 Location: 2 98388-2 98715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: WCKO01000002.1 Bacteroides salyersiae strain BIOML-A28 scaffold2_size592816, whole genome shotgun sequence (592816 bp)
Overview 1 RT 1: 399251-404105 bp Neighborhood of RT #1 [399251, 404105] RVT-UG27 Feature: gene Location: 399251-400345 bp Feature: gene Location: 400367-400828 bp Feature: gene Location: 401860-403125 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 402049-402685 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 402049-402685 bp Feature: gene Location: 403115-403516 bp Feature: gene Location: 403503-404105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WCKO01000004.1 Bacteroides salyersiae strain BIOML-A28 scaffold4_size426176, whole genome shotgun sequence (426176 bp)
Overview 1 RT 1: 177486-185470 bp Neighborhood of RT #1 [177486, 185470] RVT-DGRs Feature: gene Location: 177486-182012 bp Feature: gene Location: 182018-182332 bp Feature: gene Location: 182698-183744 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 182905-183532 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 182905-183532 bp Feature: gene Location: 183805-183999 bp Feature: gene Location: 184043-185470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCKO01000006.1 Bacteroides salyersiae strain BIOML-A28 scaffold6_size351191, whole genome shotgun sequence (351377 bp)
Overview 1 RT 1: 161152-169723 bp Neighborhood of RT #1 [161152, 171504] RVT-DGRs CotH LRR_AMN1 Feature: gene Location: 161152-161442 bp Feature: gene Location: 161651-162133 bp Feature: gene Location: 162133-163434 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 162346-162943 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 162346-162943 bp Feature: gene Location: 163669-163830 bp Feature: gene Location: 163939-171504 bp Feature: domain Description: CotH Location: 167776-168664 bp Feature: domain Description: CotH Location: 167776-168664 bp Feature: domain Description: LRR_AMN1 Location: 169297-169723 bp Feature: domain Description: LRR_AMN1 Location: 169297-169723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, CotH (pfam08757), LRR_AMN1 (sd00034)

Seq: WCKO01000007.1 Bacteroides salyersiae strain BIOML-A28 scaffold7_size253964, whole genome shotgun sequence (253862 bp)
Overview 1 RT 1: 147881-158051 bp Neighborhood of RT #1 [147881, 158089] Laminin_G_3 CotH LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 147881-154669 bp Feature: domain Description: Laminin_G_3 Location: 150317-150698 bp Feature: domain Description: Laminin_G_3 Location: 150317-1506 98 bp Feature: domain Description: CotH Location: 150959-151901 bp Feature: domain Description: CotH Location: 150959-151901 bp Feature: domain Description: LRR_AMN1 Location: 152426-152873 bp Feature: domain Description: LRR_AMN1 Location: 152426 -152873 bp Feature: gene Location: 154831-155049 bp Feature: gene Location: 155103-156398 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 155319-155910 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 155319-155910 bp Feature: gene Location: 156400-156894 bp Feature: gene Location: 156944-158089 bp Feature: domain Description: Arm-DNA-bind_5 Location: 156968-157214 bp Feature: domain Description: Arm-DNA-bind_5 Location: 156 96 8-157214 bp Feature: domain Description: Phage_int_SAM_5 Location: 157253-157538 bp Feature: domain Description: Phage_int_SAM_5 Location: 157253-157538 bp Feature: domain Description: INTN1_C_like Location: 157577-158051 bp Feature: domain Description: INTN1_C_like Location: 157577-158051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)