myRT

myRT report for GCA_009093775.1_ASM909377v1

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Seq: WDEO01000012.1 Bacteroides xylanisolvens strain BIOML-A70 scaffold12_size153960, whole genome shotgun sequence (153960 bp)
Overview 1 RT 1: 17984-21972 bp Neighborhood of RT #1 [17984, 22046] HTH_17 RVT-UG2 COG3943 Feature: gene Location: 17984-18349 bp Feature: domain Description: HTH_17 Location: 18119-18257 bp Feature: domain Description: HTH_1 7 Location: 1 81 1 9-1 8257 bp Feature: gene Location: 18689-18895 bp Feature: gene Location: 18929-20512 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 19166-20126 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 91 66-201 26 bp Feature: gene Location: 20524-21516 bp Feature: gene Location: 21681-22046 bp Feature: domain Description: COG3943 Location: 21720-21972 bp Feature: domain Description: COG3943 Location: 21 720-21 972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-UG2, COG3943 (Uncharacterized conserved protein )

Seq: WDEO01000013.1 Bacteroides xylanisolvens strain BIOML-A70 scaffold13_size147736, whole genome shotgun sequence (147736 bp)
Overview 1 RT 1: 93196-105591 bp Neighborhood of RT #1 [93196, 105722] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 93196-94020 bp Feature: domain Description: PDDEXK_2 Location: 93217-93895 bp Feature: domain Description: PDDEXK_2 Location: 932 17-93895 bp Feature: gene Location: 94189-96396 bp Feature: gene Location: 96604-97734 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 96925-97468 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9692 5-97468 bp Feature: gene Location: 97785-103826 bp Feature: domain Description: DUF4011 Location: 99015-99528 bp Feature: domain Description: DUF4011 Location: 99015-9952 8 bp Feature: domain Description: DEXXQc_SF1 Location: 99867-100308 bp Feature: domain Description: DEXXQc_SF1 Location: 99867-100308 bp Feature: domain Description: DEXXQc_SF1 Location: 101304-102054 bp Feature: domain Description: DEXXQc_SF1 Location: 101304-102 054 bp Feature: domain Description: TIGR00376 Location: 102183-102573 bp Feature: domain Description: TIGR00376 Location: 102 183-102 573 bp Feature: domain Description: MTES_1575 Location: 102726-103011 bp Feature: domain Description: MTES_1575 Location: 102 72 6-103011 bp Feature: domain Description: DUF3320 Location: 103341-103476 bp Feature: domain Description: DUF332 0 Location: 103341-103476 bp Feature: gene Location: 103923-105722 bp Feature: domain Description: rpsA Location: 103992-105591 bp Feature: domain Description: rpsA Location: 103992 -105591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: WDEO01000002.1 Bacteroides xylanisolvens strain BIOML-A70 scaffold2_size286247, whole genome shotgun sequence (286247 bp)
Overview 1 RT 1: 261868-263481 bp Neighborhood of RT #1 [261868, 263481] DDE_Tnp_IS66_C group_II_RT_mat RVT-GII Feature: gene Location: 261868-262068 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 261880-261982 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 261880-261982 bp Feature: gene Location: 262164-262466 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 262212-262449 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 262212-262449 bp Feature: gene Location: 262523-262843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262526-262763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262526-262763 bp Feature: gene Location: 262855-262983 bp Feature: gene Location: 263248-263481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), group_II_RT_mat (TIGR04416), RVT-GII

Seq: WDEO01000030.1 Bacteroides xylanisolvens strain BIOML-A70 scaffold30_size85582, whole genome shotgun sequence (85582 bp)
Overview 1 RT 1: 57010-60077 bp Neighborhood of RT #1 [57010, 60151] RVT_N RVT-GII GIIM SSB_OBF Feature: gene Location: 57010-57156 bp Feature: gene Location: 57163-57393 bp Feature: gene Location: 57479-58981 bp Feature: domain Description: RVT_N Location: 57545-57788 bp Feature: domain Description: RVT_N Location: 5754 5-57788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57833-58475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57833-584 75 bp Feature: domain Description: GIIM Note: maturase Location: 58532-58763 bp Feature: domain Description: GIIM Note: maturase Location: 58532-58763 bp Feature: gene Location: 59543-59746 bp Feature: gene Location: 59765-60151 bp Feature: domain Description: SSB_OBF Location: 59789-60077 bp Feature: domain Description: SSB_OBF Location: 59789-60077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), SSB_OBF (cd04496)

Seq: WDEO01000050.1 Bacteroides xylanisolvens strain BIOML-A70 scaffold50_size44107, whole genome shotgun sequence (44107 bp)
Overview 1 RT 1: 2347-6466 bp Neighborhood of RT #1 [2347, 6471] Bac_Flav_CT_N Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Feature: gene Location: 2347-2844 bp Feature: domain Description: Bac_Flav_CT_N Location: 2350-2425 bp Feature: domain Description: Bac_Flav_CT_N Location: 235 0-2425 bp Feature: domain Description: Bac_Flav_CT_N Location: 2560-2824 bp Feature: domain Description: Bac_Flav_CT_N Location: 25 60-2824 bp Feature: gene Location: 3015-3350 bp Feature: gene Location: 3385-5196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3649-4471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3649-4471 bp Feature: domain Description: Intron_maturas2 Location: 4540-4849 bp Feature: domain Description: Intron_maturas2 Location: 45 40-4849 bp Feature: gene Location: 5186-5893 bp Feature: domain Description: Bac_Flav_CT_N Location: 5312-5873 bp Feature: domain Description: Bac_Flav_CT_N Location: 5 312-5 873 bp Feature: gene Location: 5896-6471 bp Feature: domain Description: TraO Location: 5971-6466 bp Feature: domain Description: TraO Location: 5 971-6466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), TraO (pfam10626)

Seq: WDEO01000096.1 Bacteroides xylanisolvens strain BIOML-A70 scaffold96_size2209, whole genome shotgun sequence (2209 bp)
Overview 1 RT 1: 106-2140 bp Neighborhood of RT #1 [106, 2140] RVT_N RVT-GII GIIM Feature: gene Location: 106-1653 bp Feature: domain Description: RVT_N Location: 175-418 bp Feature: domain Description: RVT_N Location: 175-418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46 3-1108 bp Feature: domain Description: GIIM Note: maturase Location: 1162-1396 bp Feature: domain Description: GIIM Note: maturase Location: 116 2-1396 bp Feature: gene Location: 1693-1875 bp Feature: gene Location: 2009-2140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)