myRT

myRT report for GCA_009093835.1_ASM909383v1

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Seq: WDEQ01000119.1 Bacteroides xylanisolvens strain BIOML-A72 scaffold119_size19088, whole genome shotgun sequence (19088 bp)
Overview 1 RT 1: 2578-4601 bp Neighborhood of RT #1 [2578, 4636] DDE_Tnp_IS66_C group_II_RT_mat RVT-GII Translocase_SecB Feature: gene Location: 2578-2778 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2590-2692 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2590-2692 bp Feature: gene Location: 2874-3176 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2922-3159 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2922-31 59 bp Feature: gene Location: 3233-3553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3236-3473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3236-3473 bp Feature: gene Location: 3958-4191 bp Feature: gene Location: 4220-4636 bp Feature: domain Description: Translocase_SecB Location: 4277-4601 bp Feature: domain Description: Translocase_SecB Location: 4277-4601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), group_II_RT_mat (TIGR04416), RVT-GII, Translocase_SecB (cl00251)

Seq: WDEQ01000208.1 Bacteroides xylanisolvens strain BIOML-A72 scaffold208_size6650, whole genome shotgun sequence (6650 bp)
Overview 1 RT 1: 202-4306 bp Neighborhood of RT #1 [202, 4326] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N Bac_Flav_CT_N Feature: gene Location: 202-777 bp Feature: domain Description: TraO Location: 277-772 bp Feature: domain Description: TraO Location: 2 77-772 bp Feature: gene Location: 780-1487 bp Feature: domain Description: Bac_Flav_CT_N Location: 906-1467 bp Feature: domain Description: Bac_Flav_CT_N Location: 906-1467 bp Feature: gene Location: 1477-3288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1741-2563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1741-2 563 bp Feature: domain Description: Intron_maturas2 Location: 2632-2941 bp Feature: domain Description: Intron_maturas2 Location: 2 632 -2 941 bp Feature: gene Location: 3323-3658 bp Feature: gene Location: 3829-4326 bp Feature: domain Description: Bac_Flav_CT_N Location: 3832-3907 bp Feature: domain Description: Bac_Flav_CT_N Location: 3832 -3907 bp Feature: domain Description: Bac_Flav_CT_N Location: 4042-4306 bp Feature: domain Description: Bac_Flav_CT_N Location: 4042 -4306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraO (pfam10626), Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WDEQ01000022.1 Bacteroides xylanisolvens strain BIOML-A72 scaffold22_size53339, whole genome shotgun sequence (53339 bp)
Overview 1 RT 1: 41018-53212 bp Neighborhood of RT #1 [41018, 53337] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 41018-42817 bp Feature: domain Description: rpsA Location: 41087-42686 bp Feature: domain Description: rpsA Location: 41087-42686 bp Feature: gene Location: 42914-48955 bp Feature: domain Description: DUF4011 Location: 44144-44657 bp Feature: domain Description: DUF4011 Location: 44144-44657 bp Feature: domain Description: DEXXQc_SF1 Location: 44996-45437 bp Feature: domain Description: DEXXQc_SF1 Location: 44996-4543 7 bp Feature: domain Description: DEXXQc_SF1 Location: 46433-47183 bp Feature: domain Description: DEXXQc_SF1 Location: 4643 3 -47183 bp Feature: domain Description: TIGR00376 Location: 47312-47702 bp Feature: domain Description: TIGR003 76 Location: 473 12-47702 bp Feature: domain Description: MTES_1575 Location: 47855-48140 bp Feature: domain Description: MTES_1575 Location: 47855-48140 bp Feature: domain Description: DUF3320 Location: 48470-48605 bp Feature: domain Description: DUF3 3 20 Location: 48470-48605 bp Feature: gene Location: 49006-50136 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49327-49870 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 493 27-49870 bp Feature: gene Location: 50344-52551 bp Feature: gene Location: 52720-53337 bp Feature: domain Description: PDDEXK_2 Location: 52723-53212 bp Feature: domain Description: PDDEXK_2 Location: 52723 -53 212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: WDEQ01000284.1 Bacteroides xylanisolvens strain BIOML-A72 scaffold284_size2209, whole genome shotgun sequence (2209 bp)
Overview 1 RT 1: 106-2140 bp Neighborhood of RT #1 [106, 2140] RVT_N RVT-GII GIIM Feature: gene Location: 106-1653 bp Feature: domain Description: RVT_N Location: 175-418 bp Feature: domain Description: RVT_N Location: 175-4 18 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 63-1108 bp Feature: domain Description: GIIM Note: maturase Location: 1162-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1162-1396 bp Feature: gene Location: 1693-1875 bp Feature: gene Location: 2009-2140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WDEQ01000028.1 Bacteroides xylanisolvens strain BIOML-A72 scaffold28_size47433, whole genome shotgun sequence (47433 bp)
Overview 1 RT 1: 25836-28572 bp Neighborhood of RT #1 [25836, 28572] RVT_N RVT-GII GIIM Feature: gene Location: 25836-26039 bp Feature: gene Location: 26065-26199 bp Feature: gene Location: 26601-28103 bp Feature: domain Description: RVT_N Location: 26667-26910 bp Feature: domain Description: RVT_N Location: 26667-26910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26955-27597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2695 5 -275 97 bp Feature: domain Description: GIIM Note: maturase Location: 27654-27885 bp Feature: domain Description: GIIM Note: maturase Location: 2765 4-27885 bp Feature: gene Location: 28189-28419 bp Feature: gene Location: 28426-28572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WDEQ01000036.1 Bacteroides xylanisolvens strain BIOML-A72 scaffold36_size41364, whole genome shotgun sequence (41364 bp)
Overview 1 RT 1: 17959-21947 bp Neighborhood of RT #1 [17959, 22021] HTH_17 RVT-UG2 COG3943 Feature: gene Location: 17959-18324 bp Feature: domain Description: HTH_17 Location: 18094-18232 bp Feature: domain Description: HTH_17 Location: 18094-18232 bp Feature: gene Location: 18664-18870 bp Feature: gene Location: 18904-20487 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 19141-20101 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 19141-20101 bp Feature: gene Location: 20499-21491 bp Feature: gene Location: 21656-22021 bp Feature: domain Description: COG3943 Location: 21695-21947 bp Feature: domain Description: COG3943 Location: 216 95-21947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-UG2, COG3943 (Uncharacterized conserved protein )