myRT

myRT report for GCA_009093915.1_ASM909391v1

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Seq: WDEN01000067.1 Bacteroides xylanisolvens strain BIOML-A69 scaffold170_size15544, whole genome shotgun sequence (15544 bp)
Overview 1 RT 1: 133-4993 bp Neighborhood of RT #1 [133, 5007] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 133-1827 bp Feature: domain Description: Bac_Flav_CT_G Location: 253-1819 bp Feature: domain Description: Bac_Flav_CT_G Location: 253-1 81 9 bp Feature: gene Location: 1824-3485 bp Feature: RT Description: RVT_N Location: 1878-2121 bp Feature: RT Description: RVT_N Location: 1 878-21 21 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2166-2814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 66-281 4 bp Feature: domain Description: GIIM Note: maturase Location: 2868-3099 bp Feature: domain Description: GIIM Note: maturase Location: 2868-3099 bp Feature: gene Location: 3567-3947 bp Feature: gene Location: 4069-5007 bp Feature: domain Description: Bac_Flav_CT_G Location: 4072-4993 bp Feature: domain Description: Bac_Flav_CT_G Location: 4072-4993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WDEN01000017.1 Bacteroides xylanisolvens strain BIOML-A69 scaffold17_size101835, whole genome shotgun sequence (101835 bp)
Overview 1 RT 1: 1199-13594 bp Neighborhood of RT #1 [1199, 13725] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 1199-2023 bp Feature: domain Description: PDDEXK_2 Location: 1220-1898 bp Feature: domain Description: PDDEXK_2 Location: 12 2 0-1898 bp Feature: gene Location: 2192-4399 bp Feature: gene Location: 4607-5737 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4928-5471 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 492 8-5471 bp Feature: gene Location: 5788-11829 bp Feature: domain Description: DUF4011 Location: 7018-7531 bp Feature: domain Description: DUF4011 Location: 7018-7531 bp Feature: domain Description: DEXXQc_SF1 Location: 7870-8311 bp Feature: domain Description: DEXXQc_SF1 Location: 7870-8311 bp Feature: domain Description: DEXXQc_SF1 Location: 9307-10057 bp Feature: domain Description: DEXXQc_SF1 Location: 9307-10057 bp Feature: domain Description: TIGR00376 Location: 10186-10576 bp Feature: domain Description: TIGR00376 Location: 10186-10576 bp Feature: domain Description: MTES_1575 Location: 10729-11014 bp Feature: domain Description: MTES_1575 Location: 1072 9-11014 bp Feature: domain Description: DUF3320 Location: 11344-11479 bp Feature: domain Description: DUF332 0 Location: 11344-11479 bp Feature: gene Location: 11926-13725 bp Feature: domain Description: rpsA Location: 11995-13594 bp Feature: domain Description: rpsA Location: 11995-13594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784)

Seq: WDEN01000019.1 Bacteroides xylanisolvens strain BIOML-A69 scaffold20_size157279, whole genome shotgun sequence (157332 bp)
Overview 1 RT 1: 155608-157330 bp Neighborhood of RT #1 [155608, 157330] RVT-DGRs Feature: gene Location: 155608-155811 bp Feature: gene Location: 155851-156033 bp Feature: gene Location: 156095-156910 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 156428-156755 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 156428-156755 bp Feature: gene Location: 156876-157073 bp Feature: gene Location: 157055-157330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDEN01000022.1 Bacteroides xylanisolvens strain BIOML-A69 scaffold23_size99207, whole genome shotgun sequence (99207 bp)
Overview 1 RT 1: 20209-24796 bp Neighborhood of RT #1 [20209, 24828] MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 Feature: gene Location: 20209-20580 bp Feature: gene Location: 20635-21936 bp Feature: domain Description: MPTase-PolyVal Location: 20890-21202 bp Feature: domain Description: MPTase-PolyVal Location: 20890-21202 bp Feature: gene Location: 21950-23761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22214-23036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22214 -23036 bp Feature: domain Description: Intron_maturas2 Location: 23177-23417 bp Feature: domain Description: Intron_maturas2 Location: 23177-234 17 bp Feature: gene Location: 23892-24149 bp Feature: gene Location: 24325-24828 bp Feature: domain Description: DUF1738 Location: 24379-24796 bp Feature: domain Description: DUF1738 Location: 24 379-24 796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), DUF1738 (pfam08401)

Seq: WDEN01000002.1 Bacteroides xylanisolvens strain BIOML-A69 scaffold2_size497519, whole genome shotgun sequence (497519 bp)
Overview 1 RT 1: 372531-380472 bp Neighborhood of RT #1 [372531, 380486] SMC_prok_B Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 372531-375071 bp Feature: domain Description: SMC_prok_B Location: 374079-374391 bp Feature: domain Description: SMC_prok_B Location: 374079-374391 bp Feature: gene Location: 375292-375837 bp Feature: domain Description: Bac_Flav_CT_G Location: 375310-375724 bp Feature: domain Description: Bac_Flav_CT_G Location: 375 310-375 724 bp Feature: gene Location: 375915-377726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376179-377001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376179-377001 bp Feature: domain Description: Intron_maturas2 Location: 377076-377391 bp Feature: domain Description: Intron_maturas2 Location: 377076-377391 bp Feature: domain Description: HNHc Note: nucleases Location: 377547-377697 bp Feature: domain Description: HNHc Note: nucleases Location: 3775 47-377697 bp Feature: gene Location: 378072-378245 bp Feature: gene Location: 378273-380486 bp Feature: domain Description: Bac_Flav_CT_G Location: 378423-379932 bp Feature: domain Description: Bac_Flav_CT_G Location: 378423-379932 bp Feature: domain Description: Bac_Flav_CT_G Location: 380004-380472 bp Feature: domain Description: Bac_Flav_CT_G Location: 380004-380472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMC_prok_B (TIGR02168), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDEN01000026.1 Bacteroides xylanisolvens strain BIOML-A69 scaffold30_size70468, whole genome shotgun sequence (70468 bp)
Overview 1 RT 1: 10699-20448 bp Neighborhood of RT #1 [10699, 20448] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 10699-10941 bp Feature: gene Location: 11120-11605 bp Feature: gene Location: 11602-12906 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11818-12409 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11818-12409 bp Feature: gene Location: 13410-20129 bp Feature: domain Description: Laminin_G_3 Location: 14853-14931 bp Feature: domain Description: Laminin_G_3 Location: 14853-14931 bp Feature: domain Description: Laminin_G_3 Location: 15582-16008 bp Feature: domain Description: Laminin_G_3 Location: 15582-16 008 bp Feature: gene Location: 20143-20448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: WDEN01000036.1 Bacteroides xylanisolvens strain BIOML-A69 scaffold56_size44982, whole genome shotgun sequence (44982 bp)
Overview 1 RT 1: 34611-44780 bp Neighborhood of RT #1 [34611, 44818] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 34611-41399 bp Feature: domain Description: Laminin_G_3 Location: 37047-37428 bp Feature: domain Description: Laminin_G_3 Location: 37 047 -37 428 bp Feature: domain Description: pfam08757 Location: 38223-38547 bp Feature: domain Description: pfam087 57 Location: 38223-38547 bp Feature: domain Description: LRR_AMN1 Location: 39159-39603 bp Feature: domain Description: LRR_AMN1 Location: 39159-39603 bp Feature: gene Location: 41460-41627 bp Feature: gene Location: 41772-43127 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42048-42639 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42048-42639 bp Feature: gene Location: 43129-43623 bp Feature: gene Location: 43673-44818 bp Feature: domain Description: Arm-DNA-bind_5 Location: 43697-43943 bp Feature: domain Description: Arm-DNA-bind_5 Location: 43697 -43943 bp Feature: domain Description: Phage_int_SAM_5 Location: 43982-44267 bp Feature: domain Description: Phage_int_SAM_5 Location: 43982-44267 bp Feature: domain Description: INTN1_C_like Location: 44306-44780 bp Feature: domain Description: INTN1_C_like Location: 44306-447 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: WDEN01000044.1 Bacteroides xylanisolvens strain BIOML-A69 scaffold79_size60782, whole genome shotgun sequence (60782 bp)
Overview 1 RT 1: 30325-34656 bp Neighborhood of RT #1 [30325, 34656] NlpD dnaG RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 30325-30777 bp Feature: domain Description: NlpD Location: 30355-30739 bp Feature: domain Description: NlpD Location: 30355-30739 bp Feature: gene Location: 30794-30952 bp Feature: domain Description: dnaG Location: 30863-30944 bp Feature: domain Description: dnaG Location: 308 63-30944 bp Feature: gene Location: 31524-33332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31788-32610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3178 8 -32610 bp Feature: domain Description: Intron_maturas2 Location: 32679-32988 bp Feature: domain Description: Intron_maturas2 Location: 32679-3298 8 bp Feature: gene Location: 33304-34227 bp Feature: domain Description: Toprim_2 Location: 33850-34132 bp Feature: domain Description: Toprim_2 Location: 338 50-34132 bp Feature: gene Location: 34255-34656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), dnaG (TIGR01391), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)