myRT

myRT report for GCA_009093945.1_ASM909394v1

Download annotations/find similar RTs

Seq: WDEP01000175.1 Bacteroides xylanisolvens strain BIOML-A71 scaffold175_size2773, whole genome shotgun sequence (2773 bp)
Overview 1 RT 1: 1-2771 bp Neighborhood of RT #1 [1, 2770] Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N Feature: gene Location: 1-141 bp Feature: domain Description: Bac_Flav_CT_N Location: 4-121 bp Feature: domain Description: Bac_Flav_CT_N Location: 4-1 21 bp Feature: gene Location: 312-647 bp Feature: gene Location: 682-2493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 946-1768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 946-1 768 bp Feature: domain Description: Intron_maturas2 Location: 1837-2146 bp Feature: domain Description: Intron_maturas2 Location: 1 837-21 46 bp Feature: gene Location: 2483-2770 bp Feature: domain Description: Bac_Flav_CT_N Location: 2609-2771 bp Feature: domain Description: Bac_Flav_CT_N Location: 2609-2771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WDEP01000017.1 Bacteroides xylanisolvens strain BIOML-A71 scaffold17_size87353, whole genome shotgun sequence (87353 bp)
Overview 1 RT 1: 22300-24272 bp Neighborhood of RT #1 [22300, 24358] Translocase_SecB RVT-GII group_II_RT_mat DDE_Tnp_IS66_C Feature: gene Location: 22300-22716 bp Feature: domain Description: Translocase_SecB Location: 22357-22681 bp Feature: domain Description: Translocase_SecB Location: 2 2 357-2 2 681 bp Feature: gene Location: 22745-22978 bp Feature: gene Location: 23383-23703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23386-23623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3386-2 362 3 bp Feature: gene Location: 23760-24062 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 23808-24045 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 3808-2 4045 bp Feature: gene Location: 24158-24358 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 24170-24272 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 4170-2 42 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Translocase_SecB (cl00251), RVT-GII, group_II_RT_mat (TIGR04416), DDE_Tnp_IS66_C (pfam13817)

Seq: WDEP01000187.1 Bacteroides xylanisolvens strain BIOML-A71 scaffold187_size2209, whole genome shotgun sequence (2209 bp)
Overview 1 RT 1: 106-2140 bp Neighborhood of RT #1 [106, 2140] RVT_N RVT-GII GIIM Feature: gene Location: 106-1653 bp Feature: domain Description: RVT_N Location: 175-418 bp Feature: domain Description: RVT_N Location: 175-418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463 -1108 bp Feature: domain Description: GIIM Note: maturase Location: 1162-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1162-13 96 bp Feature: gene Location: 1693-1875 bp Feature: gene Location: 2009-2140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WDEP01000042.1 Bacteroides xylanisolvens strain BIOML-A71 scaffold42_size46538, whole genome shotgun sequence (46538 bp)
Overview 1 RT 1: 25863-28599 bp Neighborhood of RT #1 [25863, 28599] RVT_N RVT-GII GIIM Feature: gene Location: 25863-26066 bp Feature: gene Location: 26092-26226 bp Feature: gene Location: 26628-28130 bp Feature: domain Description: RVT_N Location: 26694-26937 bp Feature: domain Description: RVT_N Location: 26694 -26937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26982-27624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26982-27624 bp Feature: domain Description: GIIM Note: maturase Location: 27681-27912 bp Feature: domain Description: GIIM Note: maturase Location: 27681-27912 bp Feature: gene Location: 28216-28446 bp Feature: gene Location: 28453-28599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WDEP01000048.1 Bacteroides xylanisolvens strain BIOML-A71 scaffold48_size44675, whole genome shotgun sequence (44675 bp)
Overview 1 RT 1: 17960-21948 bp Neighborhood of RT #1 [17960, 22022] HTH_17 RVT-UG2 COG3943 Feature: gene Location: 17960-18325 bp Feature: domain Description: HTH_17 Location: 18095-18233 bp Feature: domain Description: HTH_17 Location: 18095 -18233 bp Feature: gene Location: 18665-18871 bp Feature: gene Location: 18905-20488 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 19142-20102 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 19142-20102 bp Feature: gene Location: 20500-21492 bp Feature: gene Location: 21657-22022 bp Feature: domain Description: COG3943 Location: 21696-21948 bp Feature: domain Description: COG3943 Location: 21696-21948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-UG2, COG3943 (Uncharacterized conserved protein )

Seq: WDEP01000007.1 Bacteroides xylanisolvens strain BIOML-A71 scaffold7_size112095, whole genome shotgun sequence (112095 bp)
Overview 1 RT 1: 99612-111968 bp Neighborhood of RT #1 [99612, 112093] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 99612-101411 bp Feature: domain Description: rpsA Location: 99681-101280 bp Feature: domain Description: rpsA Location: 996 81-101280 bp Feature: gene Location: 101508-107549 bp Feature: domain Description: DUF4011 Location: 102738-103251 bp Feature: domain Description: DUF4011 Location: 102738-103251 bp Feature: domain Description: DEXXQc_SF1 Location: 103590-104031 bp Feature: domain Description: DEXXQc_SF1 Location: 103590-104031 bp Feature: domain Description: DEXXQc_SF1 Location: 105027-105777 bp Feature: domain Description: DEXXQc_SF1 Location: 105027-105777 bp Feature: domain Description: TIGR00376 Location: 105906-106296 bp Feature: domain Description: TIGR00376 Location: 105906 -106 296 bp Feature: domain Description: MTES_1575 Location: 106449-106734 bp Feature: domain Description: MTES_1575 Location: 106 449-106 734 bp Feature: domain Description: DUF3320 Location: 107064-107199 bp Feature: domain Description: DUF3320 Location: 10706 4-107199 bp Feature: gene Location: 107600-108730 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 107921-108464 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 107921-10846 4 bp Feature: gene Location: 108938-111145 bp Feature: gene Location: 111314-112093 bp Feature: domain Description: PDDEXK_2 Location: 111317-111968 bp Feature: domain Description: PDDEXK_2 Location: 111317-11196 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)