myRT

myRT report for GCA_009095545.1_ASM909554v1

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Seq: WDEK01000101.1 Bacteroides xylanisolvens strain BIOML-A65 scaffold101_size10783, whole genome shotgun sequence (10783 bp)
Overview 1 RT 1: 115-2768 bp Neighborhood of RT #1 [115, 2782] RVT-GII Intron_maturas2 zf-CHC2 Feature: gene Location: 115-1923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1 201 bp Feature: domain Description: Intron_maturas2 Location: 1270-1579 bp Feature: domain Description: Intron_maturas2 Location: 1 270-1 579 bp Feature: gene Location: 2212-2355 bp Feature: gene Location: 2471-2782 bp Feature: domain Description: zf-CHC2 Location: 2621-2768 bp Feature: domain Description: zf-CHC2 Location: 2621 -2768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), zf-CHC2 (pfam01807)

Seq: WDEK01000020.1 Bacteroides xylanisolvens strain BIOML-A65 scaffold20_size100916, whole genome shotgun sequence (100916 bp)
Overview 1 RT 1: 87738-100139 bp Neighborhood of RT #1 [87738, 100264] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 87738-89537 bp Feature: domain Description: rpsA Location: 87807-89406 bp Feature: domain Description: rpsA Location: 87807-89406 bp Feature: gene Location: 89634-95675 bp Feature: domain Description: DUF4011 Location: 90864-91377 bp Feature: domain Description: DUF4011 Location: 90864-91377 bp Feature: domain Description: DEXXQc_SF1 Location: 91716-92157 bp Feature: domain Description: DEXXQc_SF1 Location: 91716-92 157 bp Feature: domain Description: DEXXQc_SF1 Location: 93153-93903 bp Feature: domain Description: DEXXQc_SF1 Location: 93153-93903 bp Feature: domain Description: TIGR00376 Location: 94032-94422 bp Feature: domain Description: TIGR00376 Location: 94032 -9442 2 bp Feature: domain Description: MTES_1575 Location: 94575-94860 bp Feature: domain Description: MTES_1575 Location: 94575-94860 bp Feature: domain Description: DUF3320 Location: 95190-95325 bp Feature: domain Description: DUF332 0 Location: 95190-9532 5 bp Feature: gene Location: 95726-96856 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 96047-96590 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 96047-96590 bp Feature: gene Location: 97064-99271 bp Feature: gene Location: 99440-100264 bp Feature: domain Description: PDDEXK_2 Location: 99461-100139 bp Feature: domain Description: PDDEXK_2 Location: 99461-100139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: WDEK01000029.1 Bacteroides xylanisolvens strain BIOML-A65 scaffold29_size70110, whole genome shotgun sequence (70110 bp)
Overview 1 RT 1: 10348-20097 bp Neighborhood of RT #1 [10348, 20097] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 10348-10590 bp Feature: gene Location: 10769-11254 bp Feature: gene Location: 11251-12555 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11467-12058 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11467-12058 bp Feature: gene Location: 13059-19778 bp Feature: domain Description: Laminin_G_3 Location: 14502-14580 bp Feature: domain Description: Laminin_G_3 Location: 14502-14580 bp Feature: domain Description: Laminin_G_3 Location: 15231-15657 bp Feature: domain Description: Laminin_G_3 Location: 1523 1-15657 bp Feature: gene Location: 19792-20097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: WDEK01000002.1 Bacteroides xylanisolvens strain BIOML-A65 scaffold2_size293334, whole genome shotgun sequence (293334 bp)
Overview 1 RT 1: 250252-253632 bp Neighborhood of RT #1 [250252, 253632] RVT-DGRs Feature: gene Location: 250252-250836 bp Feature: gene Location: 250818-251015 bp Feature: gene Location: 250981-251796 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 251314-251641 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 251314 -25164 1 bp Feature: gene Location: 252080-252283 bp Feature: gene Location: 252313-253632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDEK01000032.1 Bacteroides xylanisolvens strain BIOML-A65 scaffold32_size64490, whole genome shotgun sequence (64490 bp)
Overview 1 RT 1: 19362-27773 bp Neighborhood of RT #1 [19362, 29569] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 19362-20507 bp Feature: domain Description: Arm-DNA-bind_5 Location: 19386-19632 bp Feature: domain Description: Arm-DNA-bind_5 Location: 19386-19632 bp Feature: domain Description: Phage_int_SAM_5 Location: 19671-19956 bp Feature: domain Description: Phage_int_SAM_5 Location: 19671-1995 6 bp Feature: domain Description: INTN1_C_like Location: 19995-20469 bp Feature: domain Description: INTN1_C_like Location: 19995 -20469 bp Feature: gene Location: 20557-21051 bp Feature: gene Location: 21053-22408 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21329-21920 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21329-21920 bp Feature: gene Location: 22553-22720 bp Feature: gene Location: 22781-29569 bp Feature: domain Description: Laminin_G_3 Location: 25217-25598 bp Feature: domain Description: Laminin_G_3 Location: 25 217-25 5 98 bp Feature: domain Description: pfam08757 Location: 26393-26717 bp Feature: domain Description: pfam0875 7 Location: 26393-26717 bp Feature: domain Description: LRR_AMN1 Location: 27329-27773 bp Feature: domain Description: LRR_AMN1 Location: 27329-27773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034)

Seq: WDEK01000044.1 Bacteroides xylanisolvens strain BIOML-A65 scaffold44_size47582, whole genome shotgun sequence (47582 bp)
Overview 1 RT 1: 21926-26513 bp Neighborhood of RT #1 [21926, 26545] MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 Feature: gene Location: 21926-22297 bp Feature: gene Location: 22352-23665 bp Feature: domain Description: MPTase-PolyVal Location: 22619-22931 bp Feature: domain Description: MPTase-PolyVal Location: 226 19-22931 bp Feature: gene Location: 23667-25478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23931-24753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23931-24753 bp Feature: domain Description: Intron_maturas2 Location: 24894-25134 bp Feature: domain Description: Intron_maturas2 Location: 24894-25134 bp Feature: gene Location: 25609-25866 bp Feature: gene Location: 26042-26545 bp Feature: domain Description: DUF1738 Location: 26096-26513 bp Feature: domain Description: DUF1738 Location: 26 096 -26 513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), DUF1738 (pfam08401)

Seq: WDEK01000005.1 Bacteroides xylanisolvens strain BIOML-A65 scaffold5_size189738, whole genome shotgun sequence (189738 bp)
Overview 1 RT 1: 112440-120381 bp Neighborhood of RT #1 [112440, 120395] SMC_prok_B Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 112440-114980 bp Feature: domain Description: SMC_prok_B Location: 113988-114300 bp Feature: domain Description: SMC_prok_B Location: 113988-114300 bp Feature: gene Location: 115201-115767 bp Feature: domain Description: Bac_Flav_CT_G Location: 115234-115654 bp Feature: domain Description: Bac_Flav_CT_G Location: 115234-115654 bp Feature: gene Location: 115824-117635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116088-116910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116088-116910 bp Feature: domain Description: Intron_maturas2 Location: 116985-117300 bp Feature: domain Description: Intron_maturas2 Location: 116985-117 300 bp Feature: domain Description: HNHc Note: nucleases Location: 117456-117606 bp Feature: domain Description: HNHc Note: nucleases Location: 117 456-117 606 bp Feature: gene Location: 117981-118154 bp Feature: gene Location: 118182-120395 bp Feature: domain Description: Bac_Flav_CT_G Location: 118332-119841 bp Feature: domain Description: Bac_Flav_CT_G Location: 118332-119841 bp Feature: domain Description: Bac_Flav_CT_G Location: 119913-120381 bp Feature: domain Description: Bac_Flav_CT_G Location: 119913-120381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMC_prok_B (TIGR02168), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDEK01000068.1 Bacteroides xylanisolvens strain BIOML-A65 scaffold68_size23954, whole genome shotgun sequence (23954 bp)
Overview 1 RT 1: 8428-13620 bp Neighborhood of RT #1 [8428, 13631] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 8428-9366 bp Feature: domain Description: Bac_Flav_CT_G Location: 8431-9352 bp Feature: domain Description: Bac_Flav_CT_G Location: 8 431-9352 bp Feature: gene Location: 9545-9694 bp Feature: gene Location: 9950-11611 bp Feature: RT Description: RVT_N Location: 10004-10247 bp Feature: RT Description: RVT_N Location: 10004-10247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10292-10940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10292-10940 bp Feature: domain Description: GIIM Note: maturase Location: 10994-11225 bp Feature: domain Description: GIIM Note: maturase Location: 10994-11225 bp Feature: gene Location: 11608-13302 bp Feature: domain Description: Bac_Flav_CT_G Location: 11728-13294 bp Feature: domain Description: Bac_Flav_CT_G Location: 11728 -13294 bp Feature: gene Location: 13317-13631 bp Feature: domain Description: DUF3876 Location: 13371-13620 bp Feature: domain Description: DUF38 76 Location: 13371-13620 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), DUF3876 (pfam12992), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)