myRT

myRT report for GCA_009101515.1_ASM910151v1

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Seq: WDCS01000088.1 Bacteroides xylanisolvens strain BIOML-A19 scaffold138_size17612, whole genome shotgun sequence (17612 bp)
Overview 1 RT 1: 654-13049 bp Neighborhood of RT #1 [654, 13180] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 654-1478 bp Feature: domain Description: PDDEXK_2 Location: 675-1353 bp Feature: domain Description: PDDEXK_2 Location: 675-1 353 bp Feature: gene Location: 1647-3854 bp Feature: gene Location: 4062-5192 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4383-4926 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4383-4926 bp Feature: gene Location: 5243-11284 bp Feature: domain Description: DUF4011 Location: 6473-6986 bp Feature: domain Description: DUF401 1 Location: 6473-6986 bp Feature: domain Description: DEXXQc_SF1 Location: 7325-7754 bp Feature: domain Description: DEXXQc_SF1 Location: 7325-7754 bp Feature: domain Description: DEXXQc_SF1 Location: 8753-9512 bp Feature: domain Description: DEXXQc_SF1 Location: 8753-951 2 bp Feature: domain Description: TIGR00376 Location: 9641-10031 bp Feature: domain Description: TIGR00376 Location: 9641 -1 0031 bp Feature: domain Description: MTES_1575 Location: 10184-10469 bp Feature: domain Description: MTES_1 575 Location: 1 01 84-1 0469 bp Feature: domain Description: DUF3320 Location: 10799-10934 bp Feature: domain Description: DUF3320 Location: 1 0799-1 0934 bp Feature: gene Location: 11381-13180 bp Feature: domain Description: rpsA Location: 11450-13049 bp Feature: domain Description: rpsA Location: 1 1 450-1 3049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: WDCS01000002.1 Bacteroides xylanisolvens strain BIOML-A19 scaffold2_size198451, whole genome shotgun sequence (198451 bp)
Overview 1 RT 1: 58577-61785 bp Neighborhood of RT #1 [58577, 61785] RVT-UG27 Feature: gene Location: 58577-58855 bp Feature: gene Location: 58885-59151 bp Feature: gene Location: 59201-60463 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59393-60029 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 59393-6002 9 bp Feature: gene Location: 60456-61124 bp Feature: gene Location: 61138-61785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDCS01000032.1 Bacteroides xylanisolvens strain BIOML-A19 scaffold34_size56455, whole genome shotgun sequence (56455 bp)
Overview 1 RT 1: 14436-22724 bp Neighborhood of RT #1 [14436, 22724] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14436-15068 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: gene Location: 15089-15547 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-1553 3 bp Feature: gene Location: 15625-17436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: gene Location: 17782-17955 bp Feature: gene Location: 17983-19812 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: gene Location: 20042-20392 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: domain Description: DUF413 3 Location: 20057-203 27 bp Feature: gene Location: 20404-20646 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: domain Description: DUF413 4 Location: 20551-20641 bp Feature: gene Location: 20651-22300 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: domain Description: GIIM Note: maturase Location: 21701-2193 2 bp Feature: gene Location: 22404-22556 bp Feature: gene Location: 22569-22724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDCS01000133.1 Bacteroides xylanisolvens strain BIOML-A19 scaffold438_size3654, whole genome shotgun sequence (3654 bp)
Overview 1 RT 1: 1-2021 bp Neighborhood of RT #1 [1, 2021] RVT-DGRs Feature: gene Location: 1-1116 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28-625 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28-625 bp Feature: gene Location: 1113-1598 bp Feature: gene Location: 1779-2021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCS01000004.1 Bacteroides xylanisolvens strain BIOML-A19 scaffold4_size167452, whole genome shotgun sequence (167452 bp)
Overview 1 RT 1: 50381-54144 bp Neighborhood of RT #1 [50381, 54215] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 50381-51715 bp Feature: gene Location: 51759-52103 bp Feature: gene Location: 52360-53394 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52570-53182 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5 25 70-5 3182 bp Feature: gene Location: 53372-53743 bp Feature: gene Location: 53745-54215 bp Feature: domain Description: Phage_holin_4_1 Location: 53832-54144 bp Feature: domain Description: Phage_holin_4_1 Location: 5 3832-5 4144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WDCS01000005.1 Bacteroides xylanisolvens strain BIOML-A19 scaffold5_size163180, whole genome shotgun sequence (163180 bp)
Overview 1 RT 1: 146515-150464 bp Neighborhood of RT #1 [146515, 150464] RVT-DGRs Feature: gene Location: 146515-146805 bp Feature: gene Location: 146815-148176 bp Feature: gene Location: 148509-149696 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 148842-149469 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 148842-14946 9 bp Feature: gene Location: 149659-150087 bp Feature: gene Location: 150084-150464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCS01000144.1 Bacteroides xylanisolvens strain BIOML-A19 scaffold618_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 1389-17 58 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 17 82-1923 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCS01000056.1 Bacteroides xylanisolvens strain BIOML-A19 scaffold72_size34867, whole genome shotgun sequence (34867 bp)
Overview 1 RT 1: 23772-33234 bp Neighborhood of RT #1 [23772, 33234] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 23772-30509 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: domain Description: Laminin_G_3 Location: 25962-2638 8 bp Feature: gene Location: 30754-30909 bp Feature: gene Location: 31026-32330 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-318 33 bp Feature: gene Location: 32327-32812 bp Feature: gene Location: 32992-33234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDCS01000062.1 Bacteroides xylanisolvens strain BIOML-A19 scaffold83_size32092, whole genome shotgun sequence (32092 bp)
Overview 1 RT 1: 29-2343 bp Neighborhood of RT #1 [29, 2372] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29-994 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-9 47 bp Feature: gene Location: 1009-1416 bp Feature: domain Description: Avd_like Location: 1042-1351 bp Feature: domain Description: Avd_like Location: 1042-1351 bp Feature: gene Location: 1563-2372 bp Feature: domain Description: DUF1566 Location: 2094-2343 bp Feature: domain Description: DUF1566 Location: 209 4-2343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: WDCS01000063.1 Bacteroides xylanisolvens strain BIOML-A19 scaffold86_size30809, whole genome shotgun sequence (30809 bp)
Overview 1 RT 1: 1-2026 bp Neighborhood of RT #1 [1, 2026] RVT-DGRs Feature: gene Location: 1-1116 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28-625 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28-625 bp Feature: gene Location: 1113-1598 bp Feature: gene Location: 1784-2026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs