myRT

myRT report for GCA_009101535.1_ASM910153v1

Download annotations/find similar RTs

Seq: WDCB01000010.1 Bacteroides xylanisolvens strain BIOML-A2 scaffold10_size120300, whole genome shotgun sequence (120300 bp)
Overview 1 RT 1: 42272-50597 bp Neighborhood of RT #1 [42272, 51145] Mob_Pre Surf_Exclu_PgrA OmpA RVT-GII GIIM RVT-GII GIIM AbiEii AbiEi_4 Feature: gene Location: 42272-43906 bp Feature: domain Description: Mob_Pre Location: 42848-43157 bp Feature: domain Description: Mob_Pre Location: 42848-431 57 bp Feature: domain Description: Surf_Exclu_PgrA Location: 43184-43496 bp Feature: domain Description: Surf_Exclu_PgrA Location: 431 84-43496 bp Feature: gene Location: 43961-45457 bp Feature: domain Description: OmpA Location: 45158-45422 bp Feature: domain Description: OmpA Location: 451 58-45422 bp Feature: gene Location: 45953-46927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46286-46901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46286-46901 bp Feature: gene Location: 46931-47347 bp Feature: domain Description: GIIM Note: maturase Location: 46961-47177 bp Feature: domain Description: GIIM Note: maturase Location: 46961 -471 77 bp Feature: gene Location: 47923-49215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48133-48790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481 33-48790 bp Feature: domain Description: GIIM Note: maturase Location: 48868-49075 bp Feature: domain Description: GIIM Note: maturase Location: 48868-49075 bp Feature: gene Location: 49356-50255 bp Feature: domain Description: AbiEii Location: 49368-49920 bp Feature: domain Description: AbiEii Location: 49368-49920 bp Feature: gene Location: 50417-51145 bp Feature: domain Description: AbiEi_4 Location: 50432-50597 bp Feature: domain Description: AbiEi_4 Location: 50432-50597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mob_Pre (pfam01076), Surf_Exclu_PgrA (TIGR04320), OmpA (pfam00691), RVT-GII, GIIM (pfam08388), AbiEii (pfam08843), AbiEi_4 (pfam13338)

Seq: WDCB01000121.1 Bacteroides xylanisolvens strain BIOML-A2 scaffold121_size9165, whole genome shotgun sequence (9165 bp)
Overview 1 RT 1: 7182-8668 bp Neighborhood of RT #1 [7182, 9162] RVT-DGRs Feature: gene Location: 7182-7424 bp Feature: gene Location: 7628-8113 bp Feature: gene Location: 8110-9162 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8113-8668 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8113-8668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCB01000152.1 Bacteroides xylanisolvens strain BIOML-A2 scaffold152_size2505, whole genome shotgun sequence (2505 bp)
Overview 1 RT 1: 120-2461 bp Neighborhood of RT #1 [120, 2461] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 120-1931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384-1206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 84-1206 bp Feature: domain Description: Intron_maturas2 Location: 1395-1605 bp Feature: domain Description: Intron_maturas2 Location: 13 95-1605 bp Feature: domain Description: HNHc Note: nucleases Location: 1755-1860 bp Feature: domain Description: HNHc Note: nucleases Location: 1755-1860 bp Feature: gene Location: 2111-2461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCB01000153.1 Bacteroides xylanisolvens strain BIOML-A2 scaffold153_size2491, whole genome shotgun sequence (2491 bp)
Overview 1 RT 1: 107-2437 bp Neighborhood of RT #1 [107, 2437] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 107-1918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1193 bp Feature: domain Description: Intron_maturas2 Location: 1268-1583 bp Feature: domain Description: Intron_maturas2 Location: 1268-1583 bp Feature: domain Description: HNHc Note: nucleases Location: 1739-1889 bp Feature: domain Description: HNHc Note: nucleases Location: 1739-1889 bp Feature: gene Location: 2264-2437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCB01000021.1 Bacteroides xylanisolvens strain BIOML-A2 scaffold21_size83024, whole genome shotgun sequence (83024 bp)
Overview 1 RT 1: 54923-64385 bp Neighborhood of RT #1 [54923, 64385] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 54923-61660 bp Feature: domain Description: Laminin_G_3 Location: 56384-56462 bp Feature: domain Description: Laminin_G_3 Location: 5 6384-5 6462 bp Feature: domain Description: Laminin_G_3 Location: 57113-57539 bp Feature: domain Description: Laminin_G_3 Location: 5 7113-5 75 39 bp Feature: gene Location: 61905-62060 bp Feature: gene Location: 62177-63481 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 62390-62984 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 62390-62984 bp Feature: gene Location: 63478-63963 bp Feature: gene Location: 64143-64385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDCB01000022.1 Bacteroides xylanisolvens strain BIOML-A2 scaffold22_size80436, whole genome shotgun sequence (80436 bp)
Overview 1 RT 1: 61849-65380 bp Neighborhood of RT #1 [61849, 65380] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 61849-62658 bp Feature: domain Description: DUF1566 Location: 62380-62629 bp Feature: domain Description: DUF156 6 Location: 6 2380-6 26 29 bp Feature: gene Location: 62805-63212 bp Feature: domain Description: Avd_like Location: 62838-63147 bp Feature: domain Description: Avd_like Location: 6 2838-6 3147 bp Feature: gene Location: 63227-64648 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63602-64304 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6 36 02-6 4304 bp Feature: gene Location: 64611-64889 bp Feature: gene Location: 65087-65380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: WDCB01000039.1 Bacteroides xylanisolvens strain BIOML-A2 scaffold39_size58200, whole genome shotgun sequence (58200 bp)
Overview 1 RT 1: 36933-47104 bp Neighborhood of RT #1 [36933, 47142] Laminin_G_3 CotH RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 36933-43721 bp Feature: domain Description: Laminin_G_3 Location: 39369-39750 bp Feature: domain Description: Laminin_G_3 Location: 39369-397 50 bp Feature: domain Description: CotH Location: 40014-41058 bp Feature: domain Description: CotH Location: 40014-41058 bp Feature: gene Location: 43883-44101 bp Feature: gene Location: 44155-45450 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44371-44962 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4437 1-44962 bp Feature: gene Location: 45452-45946 bp Feature: gene Location: 45997-47142 bp Feature: domain Description: Arm-DNA-bind_5 Location: 46021-46267 bp Feature: domain Description: Arm-DNA-bind_5 Location: 46021-46267 bp Feature: domain Description: Phage_int_SAM_5 Location: 46306-46591 bp Feature: domain Description: Phage_int_SAM_5 Location: 46306-46591 bp Feature: domain Description: INTN1_C_like Location: 46630-47104 bp Feature: domain Description: INTN1_C_like Location: 46630-47 104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: WDCB01000054.1 Bacteroides xylanisolvens strain BIOML-A2 scaffold54_size40122, whole genome shotgun sequence (40122 bp)
Overview 1 RT 1: 2110-4792 bp Neighborhood of RT #1 [2110, 4792] DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 2110-2460 bp Feature: domain Description: DUF4133 Location: 2125-2395 bp Feature: domain Description: DUF4133 Location: 2125-2395 bp Feature: gene Location: 2472-2714 bp Feature: domain Description: DUF4134 Location: 2619-2709 bp Feature: domain Description: DUF4134 Location: 2619-2709 bp Feature: gene Location: 2719-4368 bp Feature: RT Description: RVT_N Location: 2776-3019 bp Feature: RT Description: RVT_N Location: 2776-3019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3064-3712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3064-3712 bp Feature: domain Description: GIIM Note: maturase Location: 3769-4000 bp Feature: domain Description: GIIM Note: maturase Location: 3769-4000 bp Feature: gene Location: 4472-4624 bp Feature: gene Location: 4637-4792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WDCB01000066.1 Bacteroides xylanisolvens strain BIOML-A2 scaffold66_size32233, whole genome shotgun sequence (32233 bp)
Overview 1 RT 1: 30268-31736 bp Neighborhood of RT #1 [30268, 32230] RVT-DGRs Feature: gene Location: 30268-30510 bp Feature: gene Location: 30696-31181 bp Feature: gene Location: 31178-32230 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31181-31736 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31181-31736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCB01000008.1 Bacteroides xylanisolvens strain BIOML-A2 scaffold8_size136341, whole genome shotgun sequence (136341 bp)
Overview 1 RT 1: 24847-30036 bp 2 RT 2: 103635-109229 bp Neighborhood of RT #1 [24847, 30050] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Neighborhood of RT #2 [103635, 109234] DUF1566 Avd_like RVT-DGRs DUF3352 DUF3352 YwqK Feature: gene Location: 24847-25161 bp Feature: domain Description: DUF3876 Location: 24901-25150 bp Feature: domain Description: DUF3876 Location: 24901-25150 bp Feature: gene Location: 25176-26870 bp Feature: domain Description: Bac_Flav_CT_G Location: 25296-26862 bp Feature: domain Description: Bac_Flav_CT_G Location: 25296-26862 bp Feature: gene Location: 26867-28528 bp Feature: RT Description: RVT_N Location: 26921-27164 bp Feature: RT Description: RVT_N Location: 26921-27164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27209-27857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27209-27857 bp Feature: domain Description: GIIM Note: maturase Location: 27911-28142 bp Feature: domain Description: GIIM Note: maturase Location: 27911-28142 bp Feature: gene Location: 28610-28990 bp Feature: gene Location: 29112-30050 bp Feature: domain Description: Bac_Flav_CT_G Location: 29115-30036 bp Feature: domain Description: Bac_Flav_CT_G Location: 29115-30036 bp Feature: gene Location: 103635-104447 bp Feature: domain Description: DUF1566 Location: 104169-104421 bp Feature: domain Description: DUF1566 Location: 10 4169-10 4421 bp Feature: gene Location: 104593-104973 bp Feature: domain Description: Avd_like Location: 104620-104926 bp Feature: domain Description: Avd_like Location: 10 4620-10 4926 bp Feature: gene Location: 104988-106409 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 105360-106065 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10 5360-10 6065 bp Feature: gene Location: 106375-106650 bp Feature: gene Location: 107195-109234 bp Feature: domain Description: DUF3352 Location: 107285-108350 bp Feature: domain Description: DUF3352 Location: 10 7285-10 8350 bp Feature: domain Description: DUF3352 Location: 108377-108830 bp Feature: domain Description: DUF3352 Location: 10 8377-10 8830 bp Feature: domain Description: YwqK Location: 109034-109229 bp Feature: domain Description: YwqK Location: 10 9034-10 9229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, DUF3352 (pfam11832), YwqK (COG2849)

Seq: WDCB01000098.1 Bacteroides xylanisolvens strain BIOML-A2 scaffold98_size17611, whole genome shotgun sequence (17611 bp)
Overview 1 RT 1: 653-13048 bp Neighborhood of RT #1 [653, 13179] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 653-1477 bp Feature: domain Description: PDDEXK_2 Location: 674-1352 bp Feature: domain Description: PDDEXK_2 Location: 674-1352 bp Feature: gene Location: 1646-3853 bp Feature: gene Location: 4061-5191 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4382-4925 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4382-4925 bp Feature: gene Location: 5242-11283 bp Feature: domain Description: DUF4011 Location: 6472-6985 bp Feature: domain Description: DUF4011 Location: 6472-6985 bp Feature: domain Description: DEXXQc_SF1 Location: 7324-7753 bp Feature: domain Description: DEXXQc_SF1 Location: 7324-7753 bp Feature: domain Description: DEXXQc_SF1 Location: 8752-9511 bp Feature: domain Description: DEXXQc_SF1 Location: 8752-9511 bp Feature: domain Description: TIGR00376 Location: 9640-10030 bp Feature: domain Description: TIGR00376 Location: 9640-10030 bp Feature: domain Description: MTES_1575 Location: 10183-10468 bp Feature: domain Description: MTES_1575 Location: 10183-10468 bp Feature: domain Description: DUF3320 Location: 10798-10933 bp Feature: domain Description: DUF3320 Location: 10798-10933 bp Feature: gene Location: 11380-13179 bp Feature: domain Description: rpsA Location: 11449-13048 bp Feature: domain Description: rpsA Location: 11 449-13048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), PDDEXK_2 (pfam12784)