myRT

myRT report for GCA_009101555.1_ASM910155v1

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Seq: WDDY01000101.1 Bacteroides xylanisolvens strain BIOML-A53 scaffold101_size18050, whole genome shotgun sequence (18050 bp)
Overview 1 RT 1: 1092-13487 bp Neighborhood of RT #1 [1092, 13618] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 1092-1916 bp Feature: domain Description: PDDEXK_2 Location: 1113-1791 bp Feature: domain Description: PDDEXK_2 Location: 1 1 1 3-1 791 bp Feature: gene Location: 2085-4292 bp Feature: gene Location: 4500-5630 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4821-5364 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4821 -5364 bp Feature: gene Location: 5681-11722 bp Feature: domain Description: DUF4011 Location: 6911-7424 bp Feature: domain Description: DUF401 1 Location: 691 1 -7424 bp Feature: domain Description: DEXXQc_SF1 Location: 7763-8192 bp Feature: domain Description: DEXXQc_SF1 Location: 7763-81 92 bp Feature: domain Description: DEXXQc_SF1 Location: 9191-9950 bp Feature: domain Description: DEXXQc_SF1 Location: 91 91 -9950 bp Feature: domain Description: TIGR00376 Location: 10079-10469 bp Feature: domain Description: TIGR00376 Location: 1 0079-1 0469 bp Feature: domain Description: MTES_1575 Location: 10622-10907 bp Feature: domain Description: MTES_1 575 Location: 1 0622-1 0907 bp Feature: domain Description: DUF3320 Location: 11237-11372 bp Feature: domain Description: DUF3320 Location: 1 1 237-1 1 372 bp Feature: gene Location: 11819-13618 bp Feature: domain Description: rpsA Location: 11888-13487 bp Feature: domain Description: rpsA Location: 1 1 888-1 3487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: WDDY01000168.1 Bacteroides xylanisolvens strain BIOML-A53 scaffold168_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-12 30 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 1782 -192 3 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDY01000002.1 Bacteroides xylanisolvens strain BIOML-A53 scaffold2_size200220, whole genome shotgun sequence (200220 bp)
Overview 1 RT 1: 60346-63554 bp Neighborhood of RT #1 [60346, 63554] RVT-UG27 Feature: gene Location: 60346-60624 bp Feature: gene Location: 60654-60920 bp Feature: gene Location: 60970-62232 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 61162-61798 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 61162-61798 bp Feature: gene Location: 62225-62893 bp Feature: gene Location: 62907-63554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDY01000030.1 Bacteroides xylanisolvens strain BIOML-A53 scaffold30_size62541, whole genome shotgun sequence (62541 bp)
Overview 1 RT 1: 60170-62466 bp Neighborhood of RT #1 [60170, 62513] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 60170-60979 bp Feature: domain Description: DUF1566 Location: 60701-60950 bp Feature: domain Description: DUF1566 Location: 60701-60950 bp Feature: gene Location: 61126-61533 bp Feature: domain Description: Avd_like Location: 61159-61468 bp Feature: domain Description: Avd_like Location: 61159-614 68 bp Feature: gene Location: 61548-62513 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61923-62466 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61923-624 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: WDDY01000035.1 Bacteroides xylanisolvens strain BIOML-A53 scaffold35_size56455, whole genome shotgun sequence (56455 bp)
Overview 1 RT 1: 14436-22724 bp Neighborhood of RT #1 [14436, 22724] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14436-15068 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: gene Location: 15089-15547 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: domain Description: Bac_Flav_CT_G Location: 15 107-15 5 33 bp Feature: gene Location: 15625-17436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 889-16711 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: domain Description: HNHc Note: nucleases Location: 1725 7-17407 bp Feature: gene Location: 17782-17955 bp Feature: gene Location: 17983-19812 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: gene Location: 20042-20392 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: domain Description: DUF4133 Location: 2005 7-20327 bp Feature: gene Location: 20404-20646 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: domain Description: DUF4134 Location: 205 5 1-20641 bp Feature: gene Location: 20651-22300 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: domain Description: RVT_N Location: 20708-2095 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: gene Location: 22404-22556 bp Feature: gene Location: 22569-22724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDDY01000003.1 Bacteroides xylanisolvens strain BIOML-A53 scaffold3_size180044, whole genome shotgun sequence (180044 bp)
Overview 1 RT 1: 163379-167328 bp Neighborhood of RT #1 [163379, 167328] RVT-DGRs Feature: gene Location: 163379-163669 bp Feature: gene Location: 163679-165040 bp Feature: gene Location: 165373-166560 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 165706-166333 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16 5706 -16 6 333 bp Feature: gene Location: 166523-166951 bp Feature: gene Location: 166948-167328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDY01000047.1 Bacteroides xylanisolvens strain BIOML-A53 scaffold47_size48162, whole genome shotgun sequence (48162 bp)
Overview 1 RT 1: 25162-34624 bp Neighborhood of RT #1 [25162, 34624] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 25162-31899 bp Feature: domain Description: Laminin_G_3 Location: 26623-26701 bp Feature: domain Description: Laminin_G_3 Location: 26623-267 01 bp Feature: domain Description: Laminin_G_3 Location: 27352-27778 bp Feature: domain Description: Laminin_G_3 Location: 27 352-27 7 7 8 bp Feature: gene Location: 32144-32299 bp Feature: gene Location: 32416-33720 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32629-33223 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32629-33223 bp Feature: gene Location: 33717-34202 bp Feature: gene Location: 34382-34624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDDY01000004.1 Bacteroides xylanisolvens strain BIOML-A53 scaffold4_size167452, whole genome shotgun sequence (167452 bp)
Overview 1 RT 1: 113238-117072 bp Neighborhood of RT #1 [113238, 117072] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 113238-113708 bp Feature: domain Description: Phage_holin_4_1 Location: 113325-113637 bp Feature: domain Description: Phage_holin_4_1 Location: 113325-113637 bp Feature: gene Location: 113710-114081 bp Feature: gene Location: 114059-115093 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 114269-114881 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 114269-1148 8 1 bp Feature: gene Location: 115350-115694 bp Feature: gene Location: 115738-117072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: WDDY01000070.1 Bacteroides xylanisolvens strain BIOML-A53 scaffold70_size34022, whole genome shotgun sequence (34022 bp)
Overview 1 RT 1: 31098-34021 bp Neighborhood of RT #1 [31098, 34021] RVT-DGRs Feature: gene Location: 31098-31340 bp Feature: gene Location: 31521-32006 bp Feature: gene Location: 32003-33331 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32243-32840 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32243-32840 bp Feature: gene Location: 33407-33664 bp Feature: gene Location: 33686-34021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDY01000074.1 Bacteroides xylanisolvens strain BIOML-A53 scaffold74_size31706, whole genome shotgun sequence (31706 bp)
Overview 1 RT 1: 1-2923 bp Neighborhood of RT #1 [1, 2923] RVT-DGRs Feature: gene Location: 1-336 bp Feature: gene Location: 358-615 bp Feature: gene Location: 712-2013 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 925-1522 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 925-1522 bp Feature: gene Location: 2010-2495 bp Feature: gene Location: 2681-2923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs