myRT

myRT report for GCA_009101625.1_ASM910162v1

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Seq: WDDG01000148.1 Bacteroides xylanisolvens strain BIOML-A34 scaffold148_size11910, whole genome shotgun sequence (11910 bp)
Overview 1 RT 1: 2191-11909 bp Neighborhood of RT #1 [2191, 11909] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 2191-3990 bp Feature: domain Description: rpsA Location: 2260-3859 bp Feature: domain Description: rpsA Location: 2260-3859 bp Feature: gene Location: 4087-10128 bp Feature: domain Description: DUF4011 Location: 5317-5830 bp Feature: domain Description: DUF401 1 Location: 531 7-5830 bp Feature: domain Description: DEXXQc_SF1 Location: 6169-6598 bp Feature: domain Description: DEXXQc_SF1 Location: 61 69-6598 bp Feature: domain Description: DEXXQc_SF1 Location: 7597-8356 bp Feature: domain Description: DEXXQc_SF1 Location: 7597-8356 bp Feature: domain Description: TIGR00376 Location: 8485-8875 bp Feature: domain Description: TIGR00376 Location: 8485-8875 bp Feature: domain Description: MTES_1575 Location: 9028-9313 bp Feature: domain Description: MTES_1 575 Location: 9028-931 3 bp Feature: domain Description: DUF3320 Location: 9643-9778 bp Feature: domain Description: DUF3320 Location: 9643-9778 bp Feature: gene Location: 10179-11309 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10500-11043 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 0500-1 1 043 bp Feature: gene Location: 11517-11909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: WDDG01000015.1 Bacteroides xylanisolvens strain BIOML-A34 scaffold15_size56279, whole genome shotgun sequence (56279 bp)
Overview 1 RT 1: 14436-22724 bp Neighborhood of RT #1 [14436, 22724] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14436-15068 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: gene Location: 15089-15547 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: gene Location: 15625-17436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: domain Description: HNHc Note: nucleases Location: 172 57-17407 bp Feature: gene Location: 17782-17955 bp Feature: gene Location: 17983-19812 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: gene Location: 20042-20392 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: domain Description: DUF4133 Location: 2 0057-2 032 7 bp Feature: gene Location: 20404-20646 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: domain Description: DUF4134 Location: 2 0551-2 0641 bp Feature: gene Location: 20651-22300 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: domain Description: RVT_N Location: 2 0708-2 0951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0996-2 1644 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: domain Description: GIIM Note: maturase Location: 2 1701-2 1932 bp Feature: gene Location: 22404-22556 bp Feature: gene Location: 22569-22724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDDG01000001.1 Bacteroides xylanisolvens strain BIOML-A34 scaffold1_size198451, whole genome shotgun sequence (198451 bp)
Overview 1 RT 1: 58577-61785 bp Neighborhood of RT #1 [58577, 61785] RVT-UG27 Feature: gene Location: 58577-58855 bp Feature: gene Location: 58885-59151 bp Feature: gene Location: 59201-60463 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59393-60029 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 593 93 -60029 bp Feature: gene Location: 60456-61124 bp Feature: gene Location: 61138-61785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDG01000327.1 Bacteroides xylanisolvens strain BIOML-A34 scaffold327_size4305, whole genome shotgun sequence (4305 bp)
Overview 1 RT 1: 1772-4302 bp Neighborhood of RT #1 [1772, 4302] RVT-DGRs Feature: gene Location: 1772-2014 bp Feature: gene Location: 2195-2680 bp Feature: gene Location: 2677-4005 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2917-3514 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2917-3514 bp Feature: gene Location: 4081-4302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDG01000035.1 Bacteroides xylanisolvens strain BIOML-A34 scaffold35_size39710, whole genome shotgun sequence (39710 bp)
Overview 1 RT 1: 12717-16366 bp Neighborhood of RT #1 [12717, 16366] RVT-DGRs Feature: gene Location: 12717-13097 bp Feature: gene Location: 13094-13522 bp Feature: gene Location: 13485-14672 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13818-14445 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13818-14445 bp Feature: gene Location: 14794-14931 bp Feature: gene Location: 15005-16366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDG01000402.1 Bacteroides xylanisolvens strain BIOML-A34 scaffold402_size2484, whole genome shotgun sequence (2484 bp)
Overview 1 RT 1: 115-2483 bp Neighborhood of RT #1 [115, 2483] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 115-1950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1231 bp Feature: domain Description: Intron_maturas2 Location: 1390-1759 bp Feature: domain Description: Intron_maturas2 Location: 1390-1759 bp Feature: domain Description: HNHc Note: nucleases Location: 1783-1924 bp Feature: domain Description: HNHc Note: nucleases Location: 1783-1924 bp Feature: gene Location: 2352-2483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDG01000044.1 Bacteroides xylanisolvens strain BIOML-A34 scaffold44_size36963, whole genome shotgun sequence (36963 bp)
Overview 1 RT 1: 25951-35413 bp Neighborhood of RT #1 [25951, 35413] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 25951-32688 bp Feature: domain Description: Laminin_G_3 Location: 27412-27490 bp Feature: domain Description: Laminin_G_3 Location: 27 412-27 490 bp Feature: domain Description: Laminin_G_3 Location: 28141-28567 bp Feature: domain Description: Laminin_G_3 Location: 28141-28567 bp Feature: gene Location: 32933-33088 bp Feature: gene Location: 33205-34509 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33418-34012 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33418-34012 bp Feature: gene Location: 34506-34991 bp Feature: gene Location: 35171-35413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDDG01000005.1 Bacteroides xylanisolvens strain BIOML-A34 scaffold5_size85902, whole genome shotgun sequence (85902 bp)
Overview 1 RT 1: 50381-54144 bp Neighborhood of RT #1 [50381, 54215] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 50381-51715 bp Feature: gene Location: 51759-52103 bp Feature: gene Location: 52360-53394 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52570-53182 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52570-5318 2 bp Feature: gene Location: 53372-53743 bp Feature: gene Location: 53745-54215 bp Feature: domain Description: Phage_holin_4_1 Location: 53832-54144 bp Feature: domain Description: Phage_holin_4_1 Location: 538 32-54144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WDDG01000077.1 Bacteroides xylanisolvens strain BIOML-A34 scaffold77_size22309, whole genome shotgun sequence (22309 bp)
Overview 1 RT 1: 19938-22234 bp Neighborhood of RT #1 [19938, 22281] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 19938-20747 bp Feature: domain Description: DUF1566 Location: 20469-20718 bp Feature: domain Description: DUF1566 Location: 20469 -20718 bp Feature: gene Location: 20894-21301 bp Feature: domain Description: Avd_like Location: 20927-21236 bp Feature: domain Description: Avd_like Location: 209 27-21236 bp Feature: gene Location: 21316-22281 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21691-22234 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2169 1-22234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs