myRT

myRT report for GCA_009101635.1_ASM910163v1

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Seq: WDDX01000102.1 Bacteroides xylanisolvens strain BIOML-A52 scaffold102_size18050, whole genome shotgun sequence (18050 bp)
Overview 1 RT 1: 4433-16834 bp Neighborhood of RT #1 [4433, 16959] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 4433-6232 bp Feature: domain Description: rpsA Location: 4502-6101 bp Feature: domain Description: rpsA Location: 4502-61 01 bp Feature: gene Location: 6329-12370 bp Feature: domain Description: DUF4011 Location: 7559-8072 bp Feature: domain Description: DUF401 1 Location: 7559-8072 bp Feature: domain Description: DEXXQc_SF1 Location: 8411-8840 bp Feature: domain Description: DEXXQc_SF1 Location: 841 1 -8840 bp Feature: domain Description: DEXXQc_SF1 Location: 9839-10598 bp Feature: domain Description: DEXXQc_SF1 Location: 9839-1 0598 bp Feature: domain Description: TIGR00376 Location: 10727-11117 bp Feature: domain Description: TIGR00376 Location: 1 0727-1 1 1 1 7 bp Feature: domain Description: MTES_1575 Location: 11270-11555 bp Feature: domain Description: MTES_1 575 Location: 1 1 270-1 1 555 bp Feature: domain Description: DUF3320 Location: 11885-12020 bp Feature: domain Description: DUF3320 Location: 1 1 885-1 2020 bp Feature: gene Location: 12421-13551 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12742-13285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2742-1 3285 bp Feature: gene Location: 13759-15966 bp Feature: gene Location: 16135-16959 bp Feature: domain Description: PDDEXK_2 Location: 16156-16834 bp Feature: domain Description: PDDEXK_2 Location: 1 61 56-1 6834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: WDDX01000173.1 Bacteroides xylanisolvens strain BIOML-A52 scaffold173_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-12 30 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 1782 -192 3 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDX01000002.1 Bacteroides xylanisolvens strain BIOML-A52 scaffold2_size200220, whole genome shotgun sequence (200220 bp)
Overview 1 RT 1: 60346-63554 bp Neighborhood of RT #1 [60346, 63554] RVT-UG27 Feature: gene Location: 60346-60624 bp Feature: gene Location: 60654-60920 bp Feature: gene Location: 60970-62232 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 61162-61798 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 61162-61798 bp Feature: gene Location: 62225-62893 bp Feature: gene Location: 62907-63554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDX01000032.1 Bacteroides xylanisolvens strain BIOML-A52 scaffold32_size62541, whole genome shotgun sequence (62541 bp)
Overview 1 RT 1: 60170-62466 bp Neighborhood of RT #1 [60170, 62513] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 60170-60979 bp Feature: domain Description: DUF1566 Location: 60701-60950 bp Feature: domain Description: DUF1566 Location: 60701-60950 bp Feature: gene Location: 61126-61533 bp Feature: domain Description: Avd_like Location: 61159-61468 bp Feature: domain Description: Avd_like Location: 61159-614 68 bp Feature: gene Location: 61548-62513 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61923-62466 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61923-624 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: WDDX01000037.1 Bacteroides xylanisolvens strain BIOML-A52 scaffold37_size56396, whole genome shotgun sequence (56396 bp)
Overview 1 RT 1: 14377-22665 bp Neighborhood of RT #1 [14377, 22665] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14377-15009 bp Feature: domain Description: DUF4141 Location: 14401-14548 bp Feature: domain Description: DUF4141 Location: 14401-145 48 bp Feature: gene Location: 15030-15488 bp Feature: domain Description: Bac_Flav_CT_G Location: 15048-15474 bp Feature: domain Description: Bac_Flav_CT_G Location: 15 048-15 474 bp Feature: gene Location: 15566-17377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15830-16652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 830-1665 2 bp Feature: domain Description: Intron_maturas2 Location: 16727-17042 bp Feature: domain Description: Intron_maturas2 Location: 16727-17042 bp Feature: domain Description: HNHc Note: nucleases Location: 17198-17348 bp Feature: domain Description: HNHc Note: nucleases Location: 17198-17348 bp Feature: gene Location: 17723-17896 bp Feature: gene Location: 17924-19753 bp Feature: domain Description: Bac_Flav_CT_G Location: 17927-19739 bp Feature: domain Description: Bac_Flav_CT_G Location: 17927-19739 bp Feature: gene Location: 19983-20333 bp Feature: domain Description: DUF4133 Location: 19998-20268 bp Feature: domain Description: DUF4133 Location: 19998-20268 bp Feature: gene Location: 20345-20587 bp Feature: domain Description: DUF4134 Location: 20492-20582 bp Feature: domain Description: DUF4134 Location: 20492-205 82 bp Feature: gene Location: 20592-22241 bp Feature: domain Description: RVT_N Location: 20649-20892 bp Feature: domain Description: RVT_N Location: 20649-20892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20937-21585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20937-215 85 bp Feature: domain Description: GIIM Note: maturase Location: 21642-21873 bp Feature: domain Description: GIIM Note: maturase Location: 21642-21873 bp Feature: gene Location: 22345-22497 bp Feature: gene Location: 22510-22665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDDX01000003.1 Bacteroides xylanisolvens strain BIOML-A52 scaffold3_size179292, whole genome shotgun sequence (179292 bp)
Overview 1 RT 1: 162627-166576 bp Neighborhood of RT #1 [162627, 166576] RVT-DGRs Feature: gene Location: 162627-162917 bp Feature: gene Location: 162927-164288 bp Feature: gene Location: 164621-165808 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 164954-165581 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16 4954-16 5581 bp Feature: gene Location: 165771-166199 bp Feature: gene Location: 166196-166576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDX01000046.1 Bacteroides xylanisolvens strain BIOML-A52 scaffold46_size48189, whole genome shotgun sequence (48189 bp)
Overview 1 RT 1: 25162-34624 bp Neighborhood of RT #1 [25162, 34624] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 25162-31899 bp Feature: domain Description: Laminin_G_3 Location: 26623-26701 bp Feature: domain Description: Laminin_G_3 Location: 26623-267 01 bp Feature: domain Description: Laminin_G_3 Location: 27352-27778 bp Feature: domain Description: Laminin_G_3 Location: 27 352-27 7 7 8 bp Feature: gene Location: 32144-32299 bp Feature: gene Location: 32416-33720 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32629-33223 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32629-33223 bp Feature: gene Location: 33717-34202 bp Feature: gene Location: 34382-34624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDDX01000004.1 Bacteroides xylanisolvens strain BIOML-A52 scaffold4_size167393, whole genome shotgun sequence (167393 bp)
Overview 1 RT 1: 113238-117072 bp Neighborhood of RT #1 [113238, 117072] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 113238-113708 bp Feature: domain Description: Phage_holin_4_1 Location: 113325-113637 bp Feature: domain Description: Phage_holin_4_1 Location: 113325-113637 bp Feature: gene Location: 113710-114081 bp Feature: gene Location: 114059-115093 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 114269-114881 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 114269-1148 8 1 bp Feature: gene Location: 115350-115694 bp Feature: gene Location: 115738-117072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: WDDX01000069.1 Bacteroides xylanisolvens strain BIOML-A52 scaffold69_size34049, whole genome shotgun sequence (34049 bp)
Overview 1 RT 1: 2-2925 bp Neighborhood of RT #1 [2, 2925] RVT-DGRs Feature: gene Location: 2-337 bp Feature: gene Location: 359-616 bp Feature: gene Location: 692-2020 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 932-1529 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9 32-1529 bp Feature: gene Location: 2017-2502 bp Feature: gene Location: 2683-2925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs