myRT

myRT report for GCA_009101645.1_ASM910164v1

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Seq: WDDK01000010.1 Bacteroides xylanisolvens strain BIOML-A38 scaffold10_size39971, whole genome shotgun sequence (39971 bp)
Overview 1 RT 1: 6738-20243 bp Neighborhood of RT #1 [6738, 20243] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 6738-6980 bp Feature: gene Location: 7160-7645 bp Feature: gene Location: 7642-8946 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7855-8449 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7855-8449 bp Feature: gene Location: 9463-16200 bp Feature: domain Description: Laminin_G_3 Location: 10924-11002 bp Feature: domain Description: Laminin_G_3 Location: 1 0924-1 1 002 bp Feature: domain Description: Laminin_G_3 Location: 11653-12079 bp Feature: domain Description: Laminin_G_3 Location: 1 1 653-1 2079 bp Feature: gene Location: 16227-20243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: WDDK01000016.1 Bacteroides xylanisolvens strain BIOML-A38 scaffold16_size27748, whole genome shotgun sequence (27748 bp)
Overview 1 RT 1: 14359-22647 bp Neighborhood of RT #1 [14359, 22647] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14359-14991 bp Feature: domain Description: DUF4141 Location: 14383-14530 bp Feature: domain Description: DUF4141 Location: 14383-14530 bp Feature: gene Location: 15012-15470 bp Feature: domain Description: Bac_Flav_CT_G Location: 15030-15456 bp Feature: domain Description: Bac_Flav_CT_G Location: 15030-15456 bp Feature: gene Location: 15548-17359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15812-16634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15812 -16634 bp Feature: domain Description: Intron_maturas2 Location: 16709-17024 bp Feature: domain Description: Intron_maturas2 Location: 16709-1702 4 bp Feature: domain Description: HNHc Note: nucleases Location: 17180-17330 bp Feature: domain Description: HNHc Note: nucleases Location: 17180-17330 bp Feature: gene Location: 17705-17878 bp Feature: gene Location: 17906-19735 bp Feature: domain Description: Bac_Flav_CT_G Location: 17909-19721 bp Feature: domain Description: Bac_Flav_CT_G Location: 17909-1972 1 bp Feature: gene Location: 19965-20315 bp Feature: domain Description: DUF4133 Location: 19980-20250 bp Feature: domain Description: DUF4133 Location: 19980-2 02 50 bp Feature: gene Location: 20327-20569 bp Feature: domain Description: DUF4134 Location: 20474-20564 bp Feature: domain Description: DUF4134 Location: 2 0474-2 0564 bp Feature: gene Location: 20574-22223 bp Feature: domain Description: RVT_N Location: 20631-20874 bp Feature: domain Description: RVT_N Location: 2 0631-2 0874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20919-21567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0919-2 1567 bp Feature: domain Description: GIIM Note: maturase Location: 21624-21855 bp Feature: domain Description: GIIM Note: maturase Location: 2 162 4-2 1855 bp Feature: gene Location: 22327-22479 bp Feature: gene Location: 22492-22647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDDK01000001.1 Bacteroides xylanisolvens strain BIOML-A38 scaffold1_size137185, whole genome shotgun sequence (137185 bp)
Overview 1 RT 1: 105368-109301 bp Neighborhood of RT #1 [105368, 109301] RVT-UG27 Feature: gene Location: 105368-106015 bp Feature: gene Location: 106029-106697 bp Feature: gene Location: 106690-107952 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 106882-107518 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 106882-107518 bp Feature: gene Location: 108275-108772 bp Feature: gene Location: 108822-109301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDK01000300.1 Bacteroides xylanisolvens strain BIOML-A38 scaffold300_size5334, whole genome shotgun sequence (5334 bp)
Overview 1 RT 1: 924-4873 bp Neighborhood of RT #1 [924, 4873] RVT-DGRs Feature: gene Location: 924-1214 bp Feature: gene Location: 1224-2585 bp Feature: gene Location: 2918-4105 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3251-3878 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3251-3878 bp Feature: gene Location: 4068-4496 bp Feature: gene Location: 4493-4873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDK01000005.1 Bacteroides xylanisolvens strain BIOML-A38 scaffold5_size55779, whole genome shotgun sequence (55779 bp)
Overview 1 RT 1: 5261-9095 bp Neighborhood of RT #1 [5261, 9095] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 5261-5731 bp Feature: domain Description: Phage_holin_4_1 Location: 5348-5660 bp Feature: domain Description: Phage_holin_4_1 Location: 5 348-5 660 bp Feature: gene Location: 5733-6104 bp Feature: gene Location: 6082-7116 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6292-6904 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6292-6904 bp Feature: gene Location: 7373-7717 bp Feature: gene Location: 7761-9095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: WDDK01000687.1 Bacteroides xylanisolvens strain BIOML-A38 scaffold687_size2485, whole genome shotgun sequence (2485 bp)
Overview 1 RT 1: 115-2483 bp Neighborhood of RT #1 [115, 2483] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 115-1950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1231 bp Feature: domain Description: Intron_maturas2 Location: 1390-1759 bp Feature: domain Description: Intron_maturas2 Location: 1390-1759 bp Feature: domain Description: HNHc Note: nucleases Location: 1783-1924 bp Feature: domain Description: HNHc Note: nucleases Location: 1783-1924 bp Feature: gene Location: 2352-2483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDK01000693.1 Bacteroides xylanisolvens strain BIOML-A38 scaffold693_size2465, whole genome shotgun sequence (2465 bp)
Overview 1 RT 1: 3-2198 bp Neighborhood of RT #1 [3, 2464] DNA2 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 3-1874 bp Feature: domain Description: DNA2 Location: 78-705 bp Feature: domain Description: DNA2 Location: 7 8-7 05 bp Feature: domain Description: MTES_1575 Location: 774-1059 bp Feature: domain Description: MTES_157 5 Location: 7 7 4-1059 bp Feature: domain Description: DUF3320 Location: 1389-1524 bp Feature: domain Description: DUF3320 Location: 1389-1524 bp Feature: gene Location: 1925-2464 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1931-2198 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1931-2198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA2 (COG1112), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: WDDK01000082.1 Bacteroides xylanisolvens strain BIOML-A38 scaffold82_size12139, whole genome shotgun sequence (12139 bp)
Overview 1 RT 1: 28-2342 bp Neighborhood of RT #1 [28, 2371] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 28-993 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 403-946 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 403-946 bp Feature: gene Location: 1008-1415 bp Feature: domain Description: Avd_like Location: 1041-1350 bp Feature: domain Description: Avd_like Location: 1041-1350 bp Feature: gene Location: 1562-2371 bp Feature: domain Description: DUF1566 Location: 2093-2342 bp Feature: domain Description: DUF1566 Location: 2093-2342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)